Glyma08g47100 - SoyBase

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Report for Sequence Feature Glyma08g47100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46026752
stop:	46029813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24750	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:9036735-9037564 FORWARD LENGTH=169	SoyBase	E_val: 7.00E-17	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KZB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZB8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47100

Paralog	Evidence	Comments
Glyma18g38130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g356200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g47100

Limit To All Plant Sequences

>Glyma08g47100.2   sequence type=transcript   gene model=Glyma08g47100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGATGTGATAATATATATAGTGCAATCTGCAGCATGCATTATTCATAATATCTAAAGGGTAATACCTCTTTATTTTTTGGTGTGTGATAGCAGATTCTTCAATGGCTCTTTAGAAGGGCACATGAACAAGAAAGAAAGAGTAGCAACAACTTCAATAATCTCCCTCCCAAAAGGGAAGATATCAGTGGTAAGATTAGGATGGAGTGATCTTAAGTTTCTTGACTATTATTTGCTTCTTATTAGTCATATTCTAGAAATGGAGAACATAATAGACTTAAGACTTGTTATTATCTTATTTTGGTTTACTAAATGAAGAGTTTTAATGCAAATATATTTGTCTTCATTTTCAAAACAAAATGCTAAAGGGAAAGAGGTAAATCTGGTAAAGCGTGATAGATCATACAAAAGAACAAGAAACAAATGGAGCAATCCTGGTTGCAAGAACTTTAAGATATTCACTTTTCTATATAGAAAAGACATTCCAAAAGCTTTCTTTTACAGCACCCTCAACTTGAAGAGATTAGGGAGCTTTAATAGAAAACAATTTTTGCACTTCATGAAGATGAAGAGAGAAGAACCATCATCCCGAGATGTAGGAAGTGTTAACAAGGCTGATTCAGGTGGCCAACATGTTGGAAACAAGGTTTTGCCTATAACTGAGGCACCATTGTCATCCTCAGCTGAAAGAAATGACCAATGTGATTCCACAGAAACTAAAGATCAAACCAAAGGGGACAAGAAAAAGCCAATGTCGAGAATGAAAGAGCTACTTAGATGGGCTGCTTCTGCCAAGACAGAGAAAGGAGGGAAATTCAATGGAAGAAAGGTTTTAATGTTCAGAAGGCGTGGAACCCTGAAAGCAGTTCCAGATGATGACCAAGGTTGCACTGACTCACCCAAGATCAGTTTCAGATGGGATGTGGAAAGTTGCTCCACCACTTCCTCTGTCTACTCTGCTATCTCAATAGCTTCCTCATCAAAAAATGGACAAAACCAAATTGCAACTTCCACTATATCTATCCCTCCTGAACACACCACTGGTCATCACAACAACACTAGTAGAAAAAAAGGAAACTGGATCACAACAGACTCTGAATTTGTGGTGCTGGAACTATGAAAACAATGAGGCTAGAGTGGATATTCCATGTGTGGTGAAGTGTAAGCTGGCAATCTACATCAAAAGTTAATGCACTAAAAATGTGTCATGTTCATGGATAGTTTGTGCCAGATATTTCTAGAGATTTTATGTAACTTAACTAAAGATATAGAGATCAAGAGTCAAGAGAAAGAGATGTAACATCAGTAATAAATTATCTAAATGTGCTAGATGGTGGTGATCAAACAGATCAAATGTCATGTGAGCATGGCATAAGAATGTTTGGCATTATTAGGGTATAAATTTATTACTTTGTTGACTGACCTATTTAATGTAGATGGTTTTCCCAGTCAGTGGGACCACTTTTCCTGTAAATCTCTAATAATCTGCATTGGTTATAATCGGAAATGAAAGTTTAATGTCATGCTTATGCTATTAGTATAGAAGTCATGTGTAACAAACATTGATATTTTTTTTTAATGTATTGATATAACAAACAGAAATATTAT

>Glyma08g47100.3   sequence type=transcript   gene model=Glyma08g47100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCTAATGGCATTAAATGATTGCTTGTTCCATTCTCTTGGCTTTTAGTACACCATATATTGTATGTAGCTTTTGTTTCGAGCAACATTAACCGAATTCCTCACATTGGCTATGAAAATCAACTGATCATTTTGGTCCAAATAAAACCCTGAAATCCATGCTAACCCTCCATCTTCATTAGAAACCACCTTAATAAGCAAATCTCCACCAATTGGTGGCACATCCAAGATGGGGTCCAAACACATCACAGACACACAAAAATTGTATGGCCAAGAACATAGCCGCAGAGGCTGAACTACAAACATGTTTTGTTTCTTAATTAAAATTTCAAGCCCTTTTATCTTAATCTGTGCCACTTTGATCATGCTATATATAATAAGCCACTAAGCCCCCATGTTACTATATACGAATCACAAGCCAACTATTCCCCACTCAATGCTTGGTTGTCTCACCATCAATCCTTAGATTCACTGCAAATTTTGTTTTGTCTTATCTCACCAAAGGGCTCATAGACTAGACAGGAATCTTTGGCATCCAGACAGCACATACAGATCTGCAAACCTGTTCATTTGACTGATACAGTCATCACACAGACCCACAAACACAGACATAAAAAATTATATATTTTAAAAAGTGGGAACAAAGTATCCACTGTATAGGCATGCAGATTCTTCAATGGCTCTTTAGAAGGGCACATGAACAAGAAAGAAAGAGTAGCAACAACTTCAATAATCTCCCTCCCAAAAGGGAAGATATCAGTGATGAAGAGAGAAGAACCATCATCCCGAGATGTAGGAAGTGTTAACAAGGCTGATTCAGGTGGCCAACATGTTGGAAACAAGGTTTTGCCTATAACTGAGGCACCATTGTCATCCTCAGCTGAAAGAAATGACCAATGTGATTCCACAGAAACTAAAGATCAAACCAAAGGGGACAAGAAAAAGCCAATGTCGAGAATGAAAGAGCTACTTAGATGGGCTGCTTCTGCCAAGACAGAGAAAGGAGGGAAATTCAATGGAAGAAAGGTTTTAATGTTCAGAAGGCGTGGAACCCTGAAAGCAGTTCCAGATGATGACCAAGGTTGCACTGACTCACCCAAGATCAGTTTCAGATGGGATGTGGAAAGTTGCTCCACCACTTCCTCTGTCTACTCTGCTATCTCAATAGCTTCCTCATCAAAAAATGGACAAAACCAAATTGCAACTTCCACTATATCTATCCCTCCTGAACACACCACTGGTCATCACAACAACACTAGTAGAAAAAAAGGAAACTGGATCACAACAGACTCTGAATTTGTGGTGCTGGAACTATGAAAACAATGAGGCTAGAGTGGATATTCCATGTGTGGTGAAGTGTAAGCTGGCAATCTACATCAAAAGTTAATGCACTAAAAATGTGTCATGTTCATGGATAGTTTGTGCCAGATATTTCTAGAGATTTTATGTAACTTAACTAAAGATATAGAGATCAAGAGTCAAGAGAAAGAGATGTAACATCAGTAATAAATTATCTAAATGTGCTAGATGGTGGTGATCAAACAGATCAAATGTCATGTGAGCATGGCATAAGAATGTTTGGCATTATTAGGGTATAAATTTATTACTTTGTTGACTGACCTATTTAATGTAGATGGTTTTCCCAGTCAGTGGGACCACTTTTCCTGTAAATCTCTAATAATCTGCATTGGTTATAATCGGAAATGAAAGTTTAATGTCATGCTTATGCTATTAGTATAGAAGTCATGTGTAACAAACATTGATATTTTTTTTTAATGTATTGATATAACAAACAGAAATATTAT

Coding sequences of Glyma08g47100

Limit To All Plant Sequences

>Glyma08g47100.1   sequence type=CDS   gene model=Glyma08g47100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATTCTTCAATGGCTCTTTAGAAGGGCACATGAACAAGAAAGAAAGAGTAGCAACAACTTCAATAATCTCCCTCCCAAAAGGGAAGATATCAGTGGGAAAGAGGTAAATCTGGTAAAGCGTGATAGATCATACAAAAGAACAAGAAACAAATGGAGCAATCCTGGTTGCAAGAACTTTAAGATATTCACTTTTCTATATAGAAAAGACATTCCAAAAGCTTTCTTTTACAGCACCCTCAACTTGAAGAGATTAGGGAGCTTTAATAGAAAACAATTTTTGCACTTCATGAAGATGAAGAGAGAAGAACCATCATCCCGAGATGTAGGAAGTGTTAACAAGGCTGATTCAGGTGGCCAACATGTTGGAAACAAGGTTTTGCCTATAACTGAGGCACCATTGTCATCCTCAGCTGAAAGAAATGACCAATGTGATTCCACAGAAACTAAAGATCAAACCAAAGGGGACAAGAAAAAGCCAATGTCGAGAATGAAAGAGCTACTTAGATGGGCTGCTTCTGCCAAGACAGAGAAAGGAGGGAAATTCAATGGAAGAAAGGTTTTAATGTTCAGAAGGCGTGGAACCCTGAAAGCAGTTCCAGATGATGACCAAGGTTGCACTGACTCACCCAAGATCAGTTTCAGATGGGATGTGGAAAGTTGCTCCACCACTTCCTCTGTCTACTCTGCTATCTCAATAGCTTCCTCATCAAAAAATGGACAAAACCAAATTGCAACTTCCACTATATCTATCCCTCCTGAACACACCACTGGTCATCACAACAACACTAGTAGAAAAAAAGGAAACTGGATCACAACAGACTCTGAATTTGTGGTGCTGGAACTATGA

>Glyma08g47100.2   sequence type=CDS   gene model=Glyma08g47100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAATATATTTGTCTTCATTTTCAAAACAAAATGCTAAAGGGAAAGAGGTAAATCTGGTAAAGCGTGATAGATCATACAAAAGAACAAGAAACAAATGGAGCAATCCTGGTTGCAAGAACTTTAAGATATTCACTTTTCTATATAGAAAAGACATTCCAAAAGCTTTCTTTTACAGCACCCTCAACTTGAAGAGATTAGGGAGCTTTAATAGAAAACAATTTTTGCACTTCATGAAGATGAAGAGAGAAGAACCATCATCCCGAGATGTAGGAAGTGTTAACAAGGCTGATTCAGGTGGCCAACATGTTGGAAACAAGGTTTTGCCTATAACTGAGGCACCATTGTCATCCTCAGCTGAAAGAAATGACCAATGTGATTCCACAGAAACTAAAGATCAAACCAAAGGGGACAAGAAAAAGCCAATGTCGAGAATGAAAGAGCTACTTAGATGGGCTGCTTCTGCCAAGACAGAGAAAGGAGGGAAATTCAATGGAAGAAAGGTTTTAATGTTCAGAAGGCGTGGAACCCTGAAAGCAGTTCCAGATGATGACCAAGGTTGCACTGACTCACCCAAGATCAGTTTCAGATGGGATGTGGAAAGTTGCTCCACCACTTCCTCTGTCTACTCTGCTATCTCAATAGCTTCCTCATCAAAAAATGGACAAAACCAAATTGCAACTTCCACTATATCTATCCCTCCTGAACACACCACTGGTCATCACAACAACACTAGTAGAAAAAAAGGAAACTGGATCACAACAGACTCTGAATTTGTGGTGCTGGAACTATGA

>Glyma08g47100.3   sequence type=CDS   gene model=Glyma08g47100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGAAAGAAAGAGTAGCAACAACTTCAATAATCTCCCTCCCAAAAGGGAAGATATCAGTGATGAAGAGAGAAGAACCATCATCCCGAGATGTAGGAAGTGTTAACAAGGCTGATTCAGGTGGCCAACATGTTGGAAACAAGGTTTTGCCTATAACTGAGGCACCATTGTCATCCTCAGCTGAAAGAAATGACCAATGTGATTCCACAGAAACTAAAGATCAAACCAAAGGGGACAAGAAAAAGCCAATGTCGAGAATGAAAGAGCTACTTAGATGGGCTGCTTCTGCCAAGACAGAGAAAGGAGGGAAATTCAATGGAAGAAAGGTTTTAATGTTCAGAAGGCGTGGAACCCTGAAAGCAGTTCCAGATGATGACCAAGGTTGCACTGACTCACCCAAGATCAGTTTCAGATGGGATGTGGAAAGTTGCTCCACCACTTCCTCTGTCTACTCTGCTATCTCAATAGCTTCCTCATCAAAAAATGGACAAAACCAAATTGCAACTTCCACTATATCTATCCCTCCTGAACACACCACTGGTCATCACAACAACACTAGTAGAAAAAAAGGAAACTGGATCACAACAGACTCTGAATTTGTGGTGCTGGAACTATGA

Predicted protein sequences of Glyma08g47100

Limit To All Plant Sequences

>Glyma08g47100.1   sequence type=predicted peptide   gene model=Glyma08g47100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQILQWLFRRAHEQERKSSNNFNNLPPKREDISGKEVNLVKRDRSYKRTRNKWSNPGCKNFKIFTFLYRKDIPKAFFYSTLNLKRLGSFNRKQFLHFMKMKREEPSSRDVGSVNKADSGGQHVGNKVLPITEAPLSSSAERNDQCDSTETKDQTKGDKKKPMSRMKELLRWAASAKTEKGGKFNGRKVLMFRRRGTLKAVPDDDQGCTDSPKISFRWDVESCSTTSSVYSAISIASSSKNGQNQIATSTISIPPEHTTGHHNNTSRKKGNWITTDSEFVVLEL*

>Glyma08g47100.2   sequence type=predicted peptide   gene model=Glyma08g47100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIYLSSFSKQNAKGKEVNLVKRDRSYKRTRNKWSNPGCKNFKIFTFLYRKDIPKAFFYSTLNLKRLGSFNRKQFLHFMKMKREEPSSRDVGSVNKADSGGQHVGNKVLPITEAPLSSSAERNDQCDSTETKDQTKGDKKKPMSRMKELLRWAASAKTEKGGKFNGRKVLMFRRRGTLKAVPDDDQGCTDSPKISFRWDVESCSTTSSVYSAISIASSSKNGQNQIATSTISIPPEHTTGHHNNTSRKKGNWITTDSEFVVLEL*

>Glyma08g47100.3   sequence type=predicted peptide   gene model=Glyma08g47100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKERVATTSIISLPKGKISVMKREEPSSRDVGSVNKADSGGQHVGNKVLPITEAPLSSSAERNDQCDSTETKDQTKGDKKKPMSRMKELLRWAASAKTEKGGKFNGRKVLMFRRRGTLKAVPDDDQGCTDSPKISFRWDVESCSTTSSVYSAISIASSSKNGQNQIATSTISIPPEHTTGHHNNTSRKKGNWITTDSEFVVLEL*

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