SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07030 | AT | Annotation by Michelle Graham. TAIR10: Alba DNA/RNA-binding protein | chr3:2223001-2225254 REVERSE LENGTH=405 | SoyBase | E_val: 2.00E-66 | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG2567 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13516 | Panther | RIBONUCLEASE P 25KDA SUBUNIT-RELATED | JGI | ISS | |
| PF01918 | PFAM | Alba | JGI | ISS | |
| UniRef100_G7L2B5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease P protein subunit p25 n=1 Tax=Medicago truncatula RepID=G7L2B5_MEDTR | SoyBase | E_val: 9.00E-85 | ISS |
| UniRef100_UPI000233DF9B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DF9B related cluster n=1 Tax=unknown RepID=UPI000233DF9B | SoyBase | E_val: 9.00E-92 | ISS |
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Glyma08g47081 not represented in the dataset |
Glyma08g47081 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g38103 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g356000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g47081.1 sequence type=CDS gene model=Glyma08g47081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAGGTACCAGAAAGTGGAGAAGCCTAAGCCCGAGTCTCCCATCAATGAGAACGAGATCCGAATCACGACGCAGGGCGCTATTCGCAACTACATCACCTACGCCAGTTCGCTTCTTCAGGAAAAACATGCCAGCGAGATTGTTTTGAAGGCAATGGGACAAGCTATCAGCAAGACAGTTGCCATTGCAGAGATTTTAAAGCTGCACCAAGATACTGGCATCAGCTCAGTTAGCATAGTAGATACGTGGGAACCCATTGAAGAGGGTCTTGTACCTGTGGAAATGACTCGACATGTCTCTATGATCTCAATCACCTTATCAACTAGAGAATTAGACGAAAATTCTCCTGGGTATCAAGCTCCAAGTAATGTAGAACAACCAAAGCAACATTCCAATTATCAGCAGCAATCTATAAAACCAGCACGGGTTCCATATAATGCTGTACATGAAGACTCATATGGTCGAGGTCGGGGTCGGGGTCGGGGTCGGGGAAGAGGTAGAGGAAGGAATTGGGGAAGGGGTGGCTATGGCTATCAAGGTGGTTATGCAAATTATCAAGGATACGGGTATTACCAGGGGGGGTATGCAAATCATCAAGATAATGGTGGGTATTCAAACCGGGGACGAGGTGGTGGGCGAGGTAGAGGTTGGGGGTATCGTGGTAAGTTTACTCAACTACTTATGCTCCCCATTTTTTTTTTGTGA
>Glyma08g47081.1 sequence type=predicted peptide gene model=Glyma08g47081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYASSLLQEKHASEIVLKAMGQAISKTVAIAEILKLHQDTGISSVSIVDTWEPIEEGLVPVEMTRHVSMISITLSTRELDENSPGYQAPSNVEQPKQHSNYQQQSIKPARVPYNAVHEDSYGRGRGRGRGRGRGRGRNWGRGGYGYQGGYANYQGYGYYQGGYANHQDNGGYSNRGRGGGRGRGWGYRGKFTQLLMLPIFFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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