SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48840 | AT | Annotation by Michelle Graham. TAIR10: homolog of bacterial PANC | chr5:19803823-19805041 REVERSE LENGTH=310 | SoyBase | E_val: 1.00E-26 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0015940 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pantothenate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004592 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pantoate-beta-alanine ligase activity | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| PTHR21299 | Panther | CYTIDYLATE KINASE | JGI | ISS | |
| PTHR21299:SF1 | Panther | PANTOATE-BETA-ALANINE LIGASE | JGI | ISS | |
| PF02569 | PFAM | Pantoate-beta-alanine ligase | JGI | ISS | |
| UniRef100_O24035 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pantoate--beta-alanine ligase n=1 Tax=Lotus japonicus RepID=PANC_LOTJA | SoyBase | E_val: 3.00E-43 | ISS |
| UniRef100_UPI0002337C6F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337C6F related cluster n=1 Tax=unknown RepID=UPI0002337C6F | SoyBase | E_val: 2.00E-90 | ISS |
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Glyma08g47051 not represented in the dataset |
Glyma08g47051 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g38038 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g355700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g47051.1 sequence type=CDS gene model=Glyma08g47051 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGGCCCAGGGCAAGCTCATCGGGCTGGTCCCCACCATGGGCTTCCTCCACGCGGGCCACCTCTCCCTCGTGGCCCAGGCCCGCCAACTCTTCATCTACGTGTACCAGATCTATCTTGATTTTTCCATAAAAGTCATAGGTGCTGAAATAATACGTGATAATGATGGCCTGGCAATGAGTTCACGTAATGTGCACCTTTCACCTGAAGAGAGGGAAAAAGCCTCTTCACTTTCAGCTGCACTAAGCCTTAATAAATTGTTAGCACTATCAATAAATAAATCATTGTTAAGAGCTAAATCATCAGCAGAAGCTGGTCAAGTGCATTCTGAGAAGTTGAGAAATTTGGTTGTCCAATGTATTACTGATGCTGGTGGAAAGATTGATTATGCTGAGATACTTTTGCCTGCTGTCTTCTTTGTTGCTGCATGGTTTGGCAAAGTCAGGCTTATAGACAACATAGAAATCAACTTGTCAATGAATGTTTAA
>Glyma08g47051.1 sequence type=predicted peptide gene model=Glyma08g47051 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRAQGKLIGLVPTMGFLHAGHLSLVAQARQLFIYVYQIYLDFSIKVIGAEIIRDNDGLAMSSRNVHLSPEEREKASSLSAALSLNKLLALSINKSLLRAKSSAEAGQVHSEKLRNLVVQCITDAGGKIDYAEILLPAVFFVAAWFGKVRLIDNIEINLSMNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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