Glyma08g47030 - SoyBase

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Report for Sequence Feature Glyma08g47030

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45964993
stop:	45971768
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48830	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:19800269-19802625 REVERSE LENGTH=511	SoyBase	E_val: 9.00E-138	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF12452	PFAM	Protein of unknown function (DUF3685)	JGI		ISS
UniRef100_Q4C3U8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Response regulator receiver n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C3U8_CROWT	SoyBase	E_val: 6.00E-08	ISS
UniRef100_UPI0002337C6E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337C6E related cluster n=1 Tax=unknown RepID=UPI0002337C6E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g47030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g355500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g47030

Limit To All Plant Sequences

>Glyma08g47030.3   sequence type=transcript   gene model=Glyma08g47030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCTTACAAGTTACAAGCATAGCATGGAACCAAAACGGCATCTCACAGTCGCGTTTGGGAAGGTTTAAATCCCTAATCCGGGCGTGACTCTGAAAACAGAAAGGAATCAGGTACGCACAAATCCAATCCAATCCTCATCTCATCAATTTCCAAACCCACTGTGCTTCCTTCCTTTCCCCGCCAAACTTTGACCACTTTCTCTTCACTCTCCTTTCAAATTTGCCTTTTCTTTTCCAACTCTTGAGTGTGGTACGAACCTCAATTTTGTTCAAGTTTTTTGTCTCTGTCCATTTTGGTTGCTGTTAGTGGATTGCGCATTATTTTAATAGAGTTTTGAGAAGCTTTTGAAGTTGTGATTGTTCCAAGTTAGGGGAGAGCTTAAACAATGTTAGGAATGTGAATGTGTCCTTTTGTTTCTTTCTTGCTGTTAAATGCACTAGTGTGGATATAAGGGGTTAATCAAATACGCGTGTAGGAGCAGCACAATGTGTTGAGTGTGGAGCAAGAACGTTTTTATTTTATCAATGGCAGAATGTGTGGCTTCTGCATTCTGTGTTAAACTGGTTACGCAGAGAAGGCCTGTTAGAGAGAGGGGCTTCTCGCGTCAGATTACAAATCTCAAGACTTTTCAAAGAAAGTATTCCAGAAGTGGATGTAAATTTGTTCACTTTTCTACATGGAAGACATTTGATCTGAGTGTATTTGGGACCACACATTTGAAATTCACTCCTCGTCTTCAGGAACTTCCATTAAAGTGCATTGGTTTAGGGGCTTTGGTTGACTTTAATGGTGCAAAAGCCTCTGATTTGGTTCCAGTTGTTGGCCAGATGCTTTTGATGGGCAGTATATTTCTCACTTATATGGCTGGAGTAATTCCTGTTGAGAAATCTTATGCTAGTTATCAAAAGACTATTTCTGATAAAAATGTGTTTCCTGAAAGCTCAGACATTTCTGGTAGTTCAGCGAAGCAAAATTCTGGTTTTGAGTCAAAGTATGTATTGAATGTGGTGAGAGAAAAACTTTTAAATTCTCTAAATGCTTTAGCTAACAAGGATTATTCTGGAGACATCATCGTTCAATCTGCAAAGAGACCCTTGAGTTTAAGTGCTGTTGCCAGGGGTCCAAAGTTAAGGTTGCTTTGGGCTGCTTTTCAGCAAGTTGAGGAAGAGGTTAATAGTTTCAGCATTTCCACAGCTGTTGGTATGGATGATCTGTTTGAAACGTTTTATGAAATTATTCAGAGATCTTGTCACTCTACCTGTACTGCATGGCTGGAAAAAGAATTTTTCCTTCTAAAGGGCAGTGCTGACAAGGAACTTGCTTCTATGATACTTGAAAAAGTGAAAGGAGATATCACTATTGTACAGAGCATTACAAGGTCTGGCAAGAAAGATCTGTATGCAGAATTACTTTCATATCTTACTTTTGGTTCTCTCAGGGAGGATTGCTATTATGATTCGCGTATATTTGCTGTGCATGGGATTTCCATTTTAGAAGATTTAGTGATTGCTCTAGCAGATGGGGTTGCAAGCGTATATCTGGAGTTTATTTCAGTTGATAGTGATGTGTCAAGTAAAACCAATAGTTTGGATATGTCATTATGTGCTTTATCCACCAGAGAGCTCCAAAAGTTACGTAATGAGGTGGCTTTGAACCAGTGGTTGTACCACAACATGGACACAGTTGTGTCAATGTATGAGGATCGCTTTGACCTGTGTATTCTTGAGAGCCAACCTGTTGATGTAACAGACAGTATTCAGACCGAAGAGCAAAATTGGTGGAAGAGGCTTACCCAGCAAAATTCAAAAGCAATGTCACCTGAATTACATTGTATTGACATTAGCCATTTCTCAATGCCTGTAAAGCGGACCAAGGAATTAAGAGCTGTGACAGGGTGGCGATATTATTTCAGCCTCTTTCTTGAGTTGTCTGACATCACCATGCCTCTAATTAGAGCAGTTATTGATAAAGTGAGTGATGCAATCTCATTCTTTTTAGTTAGCTTGATTGGGAGGTCTTTAGGACTCATTTATACAGGCATTAGACAGTCTCTCAGATGGAAGTGAGATAACTGGTACAGTTTTGTGTAGTGCAGTTAAAATTTTCATCATTCTGGTTATATATATATATATATATATATATATATATATATATATATATATATTTTGCTTCATATATGGCGCCATTTATTTATAATAGAATAGAATTGTGGTTTAGAATCCATTAAATTGAAAATATTTCATTGCTCTCCTGTTTGGTCATGTGGGGCTTAACTGGTAGATGACAATATAAGTCGGGAGAAATTATTCATTTCGAGATAATACCATATTTAGTGTTTGACGTTTC

Coding sequences of Glyma08g47030

Limit To All Plant Sequences

>Glyma08g47030.2   sequence type=CDS   gene model=Glyma08g47030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAATGTGTGGCTTCTGCATTCTGTGTTAAACTGGTTACGCAGAGAAGGCCTGTTAGAGAGAGGGGCTTCTCGCGTCAGATTACAAATCTCAAGACTTTTCAAAGAAAGTATTCCAGAAGTGGATGTAAATTTGTTCACTTTTCTACATGGAAGACATTTGATCTGAGTGTATTTGGGACCACACATTTGAAATTCACTCCTCGTCTTCAGGAACTTCCATTAAAGTGCATTGGTTTAGGGGCTTTGGTTGACTTTAATGGTGCAAAAGCCTCTGATTTGGTTCCAGTTGTTGGCCAGATGCTTTTGATGGGCAGTATATTTCTCACTTATATGGCTGGAGTAATTCCTGTTGAGAAATCTTATGCTAGTTATCAAAAGACTATTTCTGATAAAAATGTGTTTCCTGAAAGCTCAGACATTTCTGGTAGTTCAGCGAAGCAAAATTCTGGTTTTGAGTCAAAGTATGTATTGAATGTGGTGAGAGAAAAACTTTTAAATTCTCTAAATGCTTTAGCTAACAAGGATTATTCTGGAGACATCATCGTTCAATCTGCAAAGAGACCCTTGAGTTTAAGTGCTGTTGCCAGGGGTCCAAAGTTAAGGTTGCTTTGGGCTGCTTTTCAGCAAGTTGAGGAAGAGGTTAATAGTTTCAGCATTTCCACAGCTGTTGGTATGGATGATCTGTTTGAAACGTTTTATGAAATTATTCAGAGATCTTGTCACTCTACCTGTACTGCATGGCTGGAAAAAGAATTTTTCCTTCTAAAGGGCAGTGCTGACAAGGAACTTGCTTCTATGATACTTGAAAAAGTGAAAGGAGATATCACTATTGTACAGAGCATTACAAGGTCTGGCAAGAAAGATCTGTATGCAGAATTACTTTCATATCTTACTTTTGGTTCTCTCAGGGAGGATTGCTATTATGATTCGCGTATATTTGCTGTGCATGGGATTTCCATTTTAGAAGATTTAGTGATTGCTCTAGCAGATGGGGTTGCAAGCGTATATCTGGAGTTTATTTCAGTTGATAGTGATGTGTCAAGTAAAACCAATAGTTTGGATATGTCATTATGTGCTTTATCCACCAGAGAGCTCCAAAAGTTACGTAATGAGGTGGCTTTGAACCAGTGGTTGTACCACAACATGGACACAGTTGTGTCAATGTATGAGGATCGCTTTGACCTGTGTATTCTTGAGAGCCAACCTGTTGATGTAACAGACAGTATTCAGACCGAAGAGCAAAATTGGTGGAAGAGGCTTACCCAGCAAAATTCAAAAGCAATGTCACCTGAATTACATTGTATTGACATTAGCCATTTCTCAATGCCTGTAAAGCGGACCAAGGAATTAAGAGCTGTGACAGGGTGGCGATATTATTTCAGCCTCTTTCTTGAGTTGTCTGACATCACCATGCCTCTAATTAGAGCAGTTATTGATAAAGTGAGTGATGCAATCTCATTCTTTTTAGTTAGCTTGATTGGGAGGTCTTTAGGACTCATTTATACAGGCATTAGACAGTCTCTCAGATGGAAGTGA

>Glyma08g47030.3   sequence type=CDS   gene model=Glyma08g47030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAATGTGTGGCTTCTGCATTCTGTGTTAAACTGGTTACGCAGAGAAGGCCTGTTAGAGAGAGGGGCTTCTCGCGTCAGATTACAAATCTCAAGACTTTTCAAAGAAAGTATTCCAGAAGTGGATGTAAATTTGTTCACTTTTCTACATGGAAGACATTTGATCTGAGTGTATTTGGGACCACACATTTGAAATTCACTCCTCGTCTTCAGGAACTTCCATTAAAGTGCATTGGTTTAGGGGCTTTGGTTGACTTTAATGGTGCAAAAGCCTCTGATTTGGTTCCAGTTGTTGGCCAGATGCTTTTGATGGGCAGTATATTTCTCACTTATATGGCTGGAGTAATTCCTGTTGAGAAATCTTATGCTAGTTATCAAAAGACTATTTCTGATAAAAATGTGTTTCCTGAAAGCTCAGACATTTCTGGTAGTTCAGCGAAGCAAAATTCTGGTTTTGAGTCAAAGTATGTATTGAATGTGGTGAGAGAAAAACTTTTAAATTCTCTAAATGCTTTAGCTAACAAGGATTATTCTGGAGACATCATCGTTCAATCTGCAAAGAGACCCTTGAGTTTAAGTGCTGTTGCCAGGGGTCCAAAGTTAAGGTTGCTTTGGGCTGCTTTTCAGCAAGTTGAGGAAGAGGTTAATAGTTTCAGCATTTCCACAGCTGTTGGTATGGATGATCTGTTTGAAACGTTTTATGAAATTATTCAGAGATCTTGTCACTCTACCTGTACTGCATGGCTGGAAAAAGAATTTTTCCTTCTAAAGGGCAGTGCTGACAAGGAACTTGCTTCTATGATACTTGAAAAAGTGAAAGGAGATATCACTATTGTACAGAGCATTACAAGGTCTGGCAAGAAAGATCTGTATGCAGAATTACTTTCATATCTTACTTTTGGTTCTCTCAGGGAGGATTGCTATTATGATTCGCGTATATTTGCTGTGCATGGGATTTCCATTTTAGAAGATTTAGTGATTGCTCTAGCAGATGGGGTTGCAAGCGTATATCTGGAGTTTATTTCAGTTGATAGTGATGTGTCAAGTAAAACCAATAGTTTGGATATGTCATTATGTGCTTTATCCACCAGAGAGCTCCAAAAGTTACGTAATGAGGTGGCTTTGAACCAGTGGTTGTACCACAACATGGACACAGTTGTGTCAATGTATGAGGATCGCTTTGACCTGTGTATTCTTGAGAGCCAACCTGTTGATGTAACAGACAGTATTCAGACCGAAGAGCAAAATTGGTGGAAGAGGCTTACCCAGCAAAATTCAAAAGCAATGTCACCTGAATTACATTGTATTGACATTAGCCATTTCTCAATGCCTGTAAAGCGGACCAAGGAATTAAGAGCTGTGACAGGGTGGCGATATTATTTCAGCCTCTTTCTTGAGTTGTCTGACATCACCATGCCTCTAATTAGAGCAGTTATTGATAAAGTGAGTGATGCAATCTCATTCTTTTTAGTTAGCTTGATTGGGAGGTCTTTAGGACTCATTTATACAGGCATTAGACAGTCTCTCAGATGGAAGTGA

Predicted protein sequences of Glyma08g47030

Limit To All Plant Sequences

>Glyma08g47030.2   sequence type=predicted peptide   gene model=Glyma08g47030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAECVASAFCVKLVTQRRPVRERGFSRQITNLKTFQRKYSRSGCKFVHFSTWKTFDLSVFGTTHLKFTPRLQELPLKCIGLGALVDFNGAKASDLVPVVGQMLLMGSIFLTYMAGVIPVEKSYASYQKTISDKNVFPESSDISGSSAKQNSGFESKYVLNVVREKLLNSLNALANKDYSGDIIVQSAKRPLSLSAVARGPKLRLLWAAFQQVEEEVNSFSISTAVGMDDLFETFYEIIQRSCHSTCTAWLEKEFFLLKGSADKELASMILEKVKGDITIVQSITRSGKKDLYAELLSYLTFGSLREDCYYDSRIFAVHGISILEDLVIALADGVASVYLEFISVDSDVSSKTNSLDMSLCALSTRELQKLRNEVALNQWLYHNMDTVVSMYEDRFDLCILESQPVDVTDSIQTEEQNWWKRLTQQNSKAMSPELHCIDISHFSMPVKRTKELRAVTGWRYYFSLFLELSDITMPLIRAVIDKVSDAISFFLVSLIGRSLGLIYTGIRQSLRWK*

>Glyma08g47030.3   sequence type=predicted peptide   gene model=Glyma08g47030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAECVASAFCVKLVTQRRPVRERGFSRQITNLKTFQRKYSRSGCKFVHFSTWKTFDLSVFGTTHLKFTPRLQELPLKCIGLGALVDFNGAKASDLVPVVGQMLLMGSIFLTYMAGVIPVEKSYASYQKTISDKNVFPESSDISGSSAKQNSGFESKYVLNVVREKLLNSLNALANKDYSGDIIVQSAKRPLSLSAVARGPKLRLLWAAFQQVEEEVNSFSISTAVGMDDLFETFYEIIQRSCHSTCTAWLEKEFFLLKGSADKELASMILEKVKGDITIVQSITRSGKKDLYAELLSYLTFGSLREDCYYDSRIFAVHGISILEDLVIALADGVASVYLEFISVDSDVSSKTNSLDMSLCALSTRELQKLRNEVALNQWLYHNMDTVVSMYEDRFDLCILESQPVDVTDSIQTEEQNWWKRLTQQNSKAMSPELHCIDISHFSMPVKRTKELRAVTGWRYYFSLFLELSDITMPLIRAVIDKVSDAISFFLVSLIGRSLGLIYTGIRQSLRWK*

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