Glyma08g46990 - SoyBase

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Report for Sequence Feature Glyma08g46990

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45927348
stop:	45929726
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19130	AT	Annotation by Michelle Graham. TAIR10: S-locus lectin protein kinase family protein \| chr2:8293789-8296275 FORWARD LENGTH=828	SoyBase	E_val: 1.00E-112	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0048544	GO-bp	Annotation by Michelle Graham. GO Biological Process: recognition of pollen	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF605	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00954	PFAM	S-locus glycoprotein family	JGI		ISS
PF01453	PFAM	D-mannose binding lectin	JGI		ISS
PF08276	PFAM	PAN-like domain	JGI		ISS
UniRef100_G7KZ40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7KZ40_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KZA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KZA6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g46990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g46990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g355100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g46990

Limit To All Plant Sequences

>Glyma08g46990.1   sequence type=CDS   gene model=Glyma08g46990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCCCAACGTCACTCTTTTTTCTACTCTTGCTTCTTTCTTTCCAATGTTCATCTTCCCTATCGTCACTGAACAAGGGGTCTTCCCTCTCAGTGGAGAAACACACACAAGACTCTATTGTCTCCCCAAATCAAATGTTCTGTGCTGGCTTCTTTCAAGTTGGTGAAAACGCCTTCTCCTTTGCCATATGGTTCAACGACCCTCACACTCACAACAACAACCACAACAACAGAAACGTTGTTTGGATTGCAAACCGCGAACAACCCGTTAATGGAAAGCTCTCAAAGCTTTCTCTCTTAAACAGTGGTAGCATCGTCTTGCTTGACGCAGATCAAATCACCACTTGGTCATCAAACACAGCATCGAATGCCCCACTAGAGTTGAATCTCCAAGATGATGGTAATCTTGTGTTACGTGAGCTCCAAGGAACCATTTTGTGGCAAAGTTTTGATTCCCCAACCGATACTCTCCTTCCGGGTCAACCTCTTACTAGATACACACAACTTGTGTCTTCAAGAAGCAAGACTAACCATTCCTCTGGTTTCTATAAGCTGCTCTTTGATAATGACAACCTTCTTCGTCTTATTTACGATGGCCCTGATGTTTCGAGCTCGTATTGGCCTCCTCAATGGCTACTCAGTTGGGATGCTGGAAGGTTTAGTTTCAACAGCAGCAGAGTTGCAGTTTTCAATTCTCTTGGAATTTTCAATTCATCGGACAATTATGGTTTTTCCACAAATGATCATGGCAAGGTGATGCCAAGAAGATTAACACTAGATTCTGACGGAAATGTTCGCGTGTACAGCAGAAATGAGGCTTCAAAGAAATGGTACGTTTCATGGCAATTTATATTTGAAACTTGCACCGTTCATGGGGTTTGTGGTGTTAACAGCACTTGCAATTTTGATCCTAAAAGAGGAAGGATATGCTCGTGTCTACCAGGACACACAGTAAAGAACCATAGTGATTGGTCTTATGGGTGTGAACCCATGTTCAATCTTTCTTGCAACGGAAATGATTCTACCTTTTTGGAGTTGCAAGGTTTTGAGTTTTACGGCTATGACAGTAATTATATACCTAACAGTACCTACATGAATTGTGTGAATTTGTGTTTGCAAGATTGTAACTGCAAAGGGTTCCAGTACAGATATGATGGGGAATATTCTACTTGCTTTACAAAGAGACAGTTGCTGAATGGGAGGCGTTCCACCAGATTTGAAGGAACGATTTACTTGAGACTTCCAAAGAACAATAACTTCTCTAAGGAAGAATCTGTGAGTGCATATGGTCATGTTTTTTCTGTGCAGCTTCACAAAGAGTATGTTAGAAAGCCAGAAAATCGTTTTGTGAGATTTTTTCTGTGGCTTGCTACTGCAGTTGGAGCTTTAGAAGTGGTTTGCTTTTTGATAATTTGGGTTTTTTTGATTAAGACGCGCCAAAAGTCTGGTGCAGATCAACAAGGCTACCATCAAGCAGAAATGGGGTTCAGAAAATATAGTTATTCTGAATTGAAGGAGGCGACAAAAGGGTTCAACCAAGAGATTTCAAGGGGTGCAGAAGGGATTGTGTACAAAGGCATTTTATCAGATCAAAGACATGTAGCAATTAAGAGACTCTATGAAGCCAAACAAGGAGAAGAGGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTCAATCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGATTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCACAAAATCTCTCATCCAACACACTTGATTGGAGTAAGAGATATAGCATTGCTCTTGGAACGGCACGAGTTTTAGCATATCTGCATGAAGAATGCTTGGAGTGGATACTGCACTGTGATATAAAGCCTCAAAACATACTTCTCGATGCTAATTATCAGCCCAAGGTAGCAGATTTTGGGTTGTCCAAGCTACTAAACAGAAATAACCTCAACAACAATTTAAGGTTTTCAGTGATCAGAGGAACTCGAGGATATATGGCACCGGAGTGGGTATACAACTCACCAATCACCTCCAAAGTAGATGTTTACAGCTATGGAATTGTTCTATTGGAGATGATAACTGGGAAAAACCCAACAACTGGTGTCCATAGCAATGCTGGAGAAGAATCATATAATGGAAGGCTGGTAACATGGGTTAGAGAGAAAAGGGGTGATGCATCTTGGCTAGAGCACATCATTGATCCTGCAATTAAAACAAATTTCGATGAATGTAAGATGGACCTTTTGGCTAGAGTGGCTTTGGATTGTGTTGAGGTAAATAAAGATCGGAGACCCACCATGAGCCAAGTAGTAGAAATGCTTCAAAGCCATGATTGTTTAAGGTGTTGA

Predicted protein sequences of Glyma08g46990

Limit To All Plant Sequences

>Glyma08g46990.1   sequence type=predicted peptide   gene model=Glyma08g46990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFPTSLFFLLLLLSFQCSSSLSSLNKGSSLSVEKHTQDSIVSPNQMFCAGFFQVGENAFSFAIWFNDPHTHNNNHNNRNVVWIANREQPVNGKLSKLSLLNSGSIVLLDADQITTWSSNTASNAPLELNLQDDGNLVLRELQGTILWQSFDSPTDTLLPGQPLTRYTQLVSSRSKTNHSSGFYKLLFDNDNLLRLIYDGPDVSSSYWPPQWLLSWDAGRFSFNSSRVAVFNSLGIFNSSDNYGFSTNDHGKVMPRRLTLDSDGNVRVYSRNEASKKWYVSWQFIFETCTVHGVCGVNSTCNFDPKRGRICSCLPGHTVKNHSDWSYGCEPMFNLSCNGNDSTFLELQGFEFYGYDSNYIPNSTYMNCVNLCLQDCNCKGFQYRYDGEYSTCFTKRQLLNGRRSTRFEGTIYLRLPKNNNFSKEESVSAYGHVFSVQLHKEYVRKPENRFVRFFLWLATAVGALEVVCFLIIWVFLIKTRQKSGADQQGYHQAEMGFRKYSYSELKEATKGFNQEISRGAEGIVYKGILSDQRHVAIKRLYEAKQGEEEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAQNLSSNTLDWSKRYSIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLNRNNLNNNLRFSVIRGTRGYMAPEWVYNSPITSKVDVYSYGIVLLEMITGKNPTTGVHSNAGEESYNGRLVTWVREKRGDASWLEHIIDPAIKTNFDECKMDLLARVALDCVEVNKDRRPTMSQVVEMLQSHDCLRC*

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