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Report for Sequence Feature Glyma08g46900

Feature Type:gene_model
Chromosome:Gm08
Start:45868506
stop:45874113
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g46900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24800AT Annotation by Michelle Graham. TAIR10: proteolysis 1 | chr3:9055653-9057795 FORWARD LENGTH=410 SoyBaseE_val: 4.00E-103ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR15898Panther UNCHARACTERIZED JGI ISS
PTHR15898:SF1Panther SUBFAMILY NOT NAMED JGI ISS
PF00569PFAM Zinc finger, ZZ type, JGI ISS
UniRef100_G7L188UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase PRT1 n=2 Tax=Medicago truncatula RepID=G7L188_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KZ98UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ98_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g46900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g46900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g354400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g46900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g46900
>Glyma08g46900.1   sequence type=CDS   gene model=Glyma08g46900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACAACGCATTCAGAGATCAAATCATGGAGGACAATGAACATGAAGAAATGCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATGTGCTGTTTCTGGTGTGTCTATAATTCAATGAGTTGTCTGCGGGAGTCTCAATGTCCAGTATGTAGGAATCAATACTATCACTTCCCAACAGTTTGCCAATTGCTTCACTTTTTGCTTCTCAAGATCTATACCGCTGCTTACAAGAGAAGGGAAAGCCAAACTCTTGAGGAAGAAAAGAAATCAGGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAGTTTGGTCATTCTGGTATCCCTAGTTCATCCTCTATTTTGAATTTGACGTCCAACTCATGCAATGTGGGAACTTCTGAATGTCTGGAGCAATCAGGGTCAACTGCCAATGAAGGAGATGAAGGCACCATCTTTTCGAACCGAGAGCCTGATATTATTGGAACTCCTGCTAAAGGAAAAAAATTGCCTCAGGAAGAGCTTTCTCTACAACAGAAATTATCAGTTGCAGATGTGACATGTACAATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAATTTGTGTCATCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGATTACCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGATGCCATTGAACTACAGCAAATCAAAGTCAAACCTGACACCCCTTCTTCTTGTTCATTGGATGGTGGTAAGAAACCAGAAAATACAGATTGGTGGTCTGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGCATTGACTGTAAGGAGAAGATGGGCTTTGATCTTTGTGGTGATTGCTACGCAAGCCGCTCCAAGCTTCCTGGTCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAAGCTTGTACAACCCAACATTATTCATAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGGGAAGGTTCGATTGACCTGGAGTCTATAGGAAACATAGAAGTTACTTCAGACGGCGCTGCATTGTTTGGTGATGGAGAAGATAACCACAATGATTCTGAAGCCGCCAATTGA
Predicted protein sequences of Glyma08g46900
>Glyma08g46900.1   sequence type=predicted peptide   gene model=Glyma08g46900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENNAFRDQIMEDNEHEEMPDSFVCCVCLDLLYKPIVLSCGHMCCFWCVYNSMSCLRESQCPVCRNQYYHFPTVCQLLHFLLLKIYTAAYKRRESQTLEEEKKSGFYSPQFDPDTCESQAKFGHSGIPSSSSILNLTSNSCNVGTSECLEQSGSTANEGDEGTIFSNREPDIIGTPAKGKKLPQEELSLQQKLSVADVTCTMCKQLLFHPVVLNCGHVYCQICVINIDDEMLRCKVCQSPHPRGLPKVCLELDHFLEEQFPEEYGQRRDAIELQQIKVKPDTPSSCSLDGGKKPENTDWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCGDCYASRSKLPGRFNQQHTSEHKFKLVQPNIIHNIMLRLATAQLGEGSIDLESIGNIEVTSDGAALFGDGEDNHNDSEAAN*






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