Glyma08g46840 - SoyBase

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Report for Sequence Feature Glyma08g46840

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45823464
stop:	45826895
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21195	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:9083191-9083687 FORWARD LENGTH=93	SoyBase	E_val: 1.00E-25	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KZ90	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ90_SOYBN	SoyBase	E_val: 8.00E-93	ISS

Expression Patterns of Glyma08g46840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g46840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g353800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g46840

Limit To All Plant Sequences

>Glyma08g46840.2   sequence type=transcript   gene model=Glyma08g46840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTCATTTTTGTCTGTCCTTAAATTATTTTGCCTCTTTATCACCTTATTGGCTCATTCTACCCCTGCTTCAAACGCATTTCTTACTTCATAGTACCTCTAAGACGCTTCTGCGAAGAAAGAAAAATCATTGTTTTGAGCCAGACCCACTTCCAAGCTTCGACTTTTACTCGAAGCTATTGGTAGATGGAATCCACAAGCTCCAAAGTCAATGTTCCAAACTCTAGACAATTATCTAAGCAGCTTTTGTTTGACCGCCGCTATGGATGGAATTGATGAGTGGAAAGACCCAGCAGAGGAAGCACTTGATGGAGGCCGAGGAATGTTTTGCATATTGCCACTTGCCAAAGCTTTGGTGCATAAGGCCTCACAATCGATAAATTGTGCAGTAATCTCAGTCAAAAAAGCTTCAGAGAAGCCCGAGTTGTTTTCCCATCAGATGCTGCAGAGTGCTTTAGATGACGGTGTTAAAAGTTTTATGACATCTTTAAAAAACGTTGGGAGTAAAGGTTTCATCCTCAACAAGAATTCTCAATCACAAGCTTTCAATAACCCTTCCCACTCACTTACAGGAAGCAATGAATGATGAAGGGAACAAAGTTAACTTGTCATAAAAAGTTTGTGTTCTATTTAATGTAACTATGCTAAATTTTCCTTATCATAATTGTCATGATGTAGAATTGTAGTTGATTCAGAGGAATTTTTTATTTACATTTTATGCATACAATGCAATTTGTCATCCATACTCCTATCTATTCACTGATAATAATAAAAAAATACTCCTAAGTCCTATCTATTCATTTAACATAAAATT

>Glyma08g46840.3   sequence type=transcript   gene model=Glyma08g46840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTCATTTTTGTCTGTCCTTAAATTATTTTGCCTCTTTATCACCTTATTGGCTCATTCTACCCCTGCTTCAAACGCATTTCTTACTTCATAGTACCTCTAAGACGCTTCTGCGAAGAAAGAAAAATCATTGTTTTGAGCCAGACCCACTTCCAAGCTTCGACTTTTACTCGAAGCTATTGGTAGATGGAATCCACAAGCTCCAAAGTCAATGTTCCAAACTCTAGACAATTATCTAAGCAGCTTTTGTTTGACCGCCGCTATGGATGGGTGTAATCTCTCTCTCTTTCACCCCTTCCTCTGCTTAGTATTGATCTTGTCCCATACTATATTTTTCAAATAGTAAATCTTTGATCACTGTTGGTTTGTGTCTGGCAGAATTGATGAGTGGAAAGACCCAGCAGAGGAAGCACTTGATGGAGGCCGAGGAATGTTTTGCATATTGCCACTTGCCAAAGCTTTGGTGCATAAGGCCTCACAATCGATAAATTGTGCAGTAATCTCAGTCAAAAAAGCTTCAGAGAAGCCCGAGTTGTTTTCCCATCAGATGCTGCAGAGTGCTTTAGATGACGGTGTTAAAAGTTTTATGACATCTTTAAAAAACGTTGGGAGTAAAGGTTTCATCCTCAACAAGAATTCTCAATCACAAGCTTTCAATAACCCTTCCCACTCACTTACAGGAAGCAATGAATGATGAAGGGAACAAAGTTAACTTGTCATAAAAAGTTTGTGTTCTATTTAATGTAACTATGCTAAATTTTCCTTATCATAATTGTCATGATGTAGAATTGTAGTTGATTCAGAGGAATTTTTTATTTACATTTTATGCATACAATGCAATTTGTCATCCATACTCCTATCTATTCACTGATAATAATAAAAAAATACTCCTAAGTCCTATCTATTCATTTAACATAAAATT

Coding sequences of Glyma08g46840

Limit To All Plant Sequences

>Glyma08g46840.1   sequence type=CDS   gene model=Glyma08g46840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCACAAGCTCCAAAGTCAATGTTCCAAACTCTAGACAATTATCTAAGCAGCTTTTGTTTGACCGCCGCTATGGATGGGTAATTGATGAGTGGAAAGACCCAGCAGAGGAAGCACTTGATGGAGGCCGAGGAATGTTTTGCATATTGCCACTTGCCAAAGCTTTGGTGCATAAGGCCTCACAATCGATAAATTGTGCAGTAATCTCAGTCAAAAAAGCTTCAGAGAAGCCCGAGTTGTTTTCCCATCAGATGCTGCAGAGTGCTTTAGATGACGGTGTTAAAAGTTTTATGACATCTTTAAAAAACGTTGGGAGTAAAGGTTTCATCCTCAACAAGAATTCTCAATCACAAGCTTTCAATAACCCTTCCCACTCACTTACAGGAAGCAATGAATGA

>Glyma08g46840.2   sequence type=CDS   gene model=Glyma08g46840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCAAACTCTAGACAATTATCTAAGCAGCTTTTGTTTGACCGCCGCTATGGATGGAATTGATGAGTGGAAAGACCCAGCAGAGGAAGCACTTGATGGAGGCCGAGGAATGTTTTGCATATTGCCACTTGCCAAAGCTTTGGTGCATAAGGCCTCACAATCGATAAATTGTGCAGTAATCTCAGTCAAAAAAGCTTCAGAGAAGCCCGAGTTGTTTTCCCATCAGATGCTGCAGAGTGCTTTAGATGACGGTGTTAAAAGTTTTATGACATCTTTAAAAAACGTTGGGAGTAAAGGTTTCATCCTCAACAAGAATTCTCAATCACAAGCTTTCAATAACCCTTCCCACTCACTTACAGGAAGCAATGAATGA

>Glyma08g46840.3   sequence type=CDS   gene model=Glyma08g46840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGCATATTGCCACTTGCCAAAGCTTTGGTGCATAAGGCCTCACAATCGATAAATTGTGCAGTAATCTCAGTCAAAAAAGCTTCAGAGAAGCCCGAGTTGTTTTCCCATCAGATGCTGCAGAGTGCTTTAGATGACGGTGTTAAAAGTTTTATGACATCTTTAAAAAACGTTGGGAGTAAAGGTTTCATCCTCAACAAGAATTCTCAATCACAAGCTTTCAATAACCCTTCCCACTCACTTACAGGAAGCAATGAATGA

Predicted protein sequences of Glyma08g46840

Limit To All Plant Sequences

>Glyma08g46840.1   sequence type=predicted peptide   gene model=Glyma08g46840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESTSSKVNVPNSRQLSKQLLFDRRYGWVIDEWKDPAEEALDGGRGMFCILPLAKALVHKASQSINCAVISVKKASEKPELFSHQMLQSALDDGVKSFMTSLKNVGSKGFILNKNSQSQAFNNPSHSLTGSNE*

>Glyma08g46840.2   sequence type=predicted peptide   gene model=Glyma08g46840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQTLDNYLSSFCLTAAMDGIDEWKDPAEEALDGGRGMFCILPLAKALVHKASQSINCAVISVKKASEKPELFSHQMLQSALDDGVKSFMTSLKNVGSKGFILNKNSQSQAFNNPSHSLTGSNE*

>Glyma08g46840.3   sequence type=predicted peptide   gene model=Glyma08g46840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCILPLAKALVHKASQSINCAVISVKKASEKPELFSHQMLQSALDDGVKSFMTSLKNVGSKGFILNKNSQSQAFNNPSHSLTGSNE*

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