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Report for Sequence Feature Glyma08g46760

Feature Type:gene_model
Chromosome:Gm08
Start:45768362
stop:45769543
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g46760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06240AT Annotation by Michelle Graham. TAIR10: F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427 SoyBaseE_val: 8.00E-24ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00646PFAM F-box domain JGI ISS
UniRef100_G7IYP6UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7IYP6_MEDTR SoyBaseE_val: 2.00E-84ISS
UniRef100_I1KZ82UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KZ82_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g46760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g46760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g352900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g46760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g46760
>Glyma08g46760.2   sequence type=CDS   gene model=Glyma08g46760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGAAACATTCCCCATAGAACTAATAGTAGAAATTCTGTCATGGCTTCCCGTGAAGCCTTTGATCCGATTCAGGTGTGTTTCCAAGACTTGGAAATCCCTAATCTTCCATCCAATCATGGTTAAATTGCACCTCCAAAGGTCGTCCAAAAACCCCCACGTCCTCTTAACATTTGAGGACAACAACAGGAACAACGATAACTGTTATTCCTTCGCTGCAACCTGCTCTATACGTCGTTTACTTGAGAATCCATCATCCACTGTTGAGGATGGTTGCTACCAATTCAACGACAAGAATCACTTTGTCGTTGGTGTCTGTAATGGCTTGGTTTGCTTGCTTAATTCTCTTGATAGGGATGACTATGAGGAATACTGGGTCCGATTTTGGAACCCGGCCACAAGGACTATGTTCGAAGATTCGCCACGCTTAAGTCTCCATTGGCGCAAATATAAAACTGGGCGGAATGATTGGGTCTGTGGGTATCCTAGGTGTGGGTTTGGCTACGACGGTTTAAGTGACACTTACAAGGTGGTGATAATCCTTTCGAATGTTAAACTACAGAGAACAGAAGTGAGAGTTCACTGCGTGGGTGATACTCGTTGGAGAAAGACTTTAACTTGTCCTGTTTTCCCGTTTATGGAACAACTTGATGGAAAGTTTGTGGGTGGCACTGTTAACTGGTTAGCACTCCATATGTCGAGTTCTTATTATCGATGGGAAGATGTTAATGTTAATGAGATAGTGATTTTTTCGTATGATCTAAACACCCAGACATACAAATATTTGTTGTTGCCTGATGGTCTTTCTGAAGTCCCTCATGTTGAGCCTATTCTCGGGGTTTTGAAGGGCTGCATGTGTCTTTCTCATGAGCACAGGAGAACCCATTTTGTTGTTTGGCAAATGATGGACTTTGGAGTTGAAAAATCTTGGACTCAATTGCTGAATGTAAGTTATCAGCATCTTCAAGTTCATGACTTTCCATCTTGTCCAATGATACCATTGTGCATGACTGAAAATAATGATCTCTTTTTGCTGGCAAACAATGAAGATAATAGAGTACAGTGTACTGAAGGTTTCAAGAACGGCAAATTTTCATTTTTTTCTTATGATTATGTTCAAAGCTTGGTTTTTCCGTATCCAAATTAA
Predicted protein sequences of Glyma08g46760
>Glyma08g46760.2   sequence type=predicted peptide   gene model=Glyma08g46760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKETFPIELIVEILSWLPVKPLIRFRCVSKTWKSLIFHPIMVKLHLQRSSKNPHVLLTFEDNNRNNDNCYSFAATCSIRRLLENPSSTVEDGCYQFNDKNHFVVGVCNGLVCLLNSLDRDDYEEYWVRFWNPATRTMFEDSPRLSLHWRKYKTGRNDWVCGYPRCGFGYDGLSDTYKVVIILSNVKLQRTEVRVHCVGDTRWRKTLTCPVFPFMEQLDGKFVGGTVNWLALHMSSSYYRWEDVNVNEIVIFSYDLNTQTYKYLLLPDGLSEVPHVEPILGVLKGCMCLSHEHRRTHFVVWQMMDFGVEKSWTQLLNVSYQHLQVHDFPSCPMIPLCMTENNDLFLLANNEDNRVQCTEGFKNGKFSFFSYDYVQSLVFPYPN*






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