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Report for Sequence Feature Glyma08g46560

Feature Type:gene_model
Chromosome:Gm08
Start:45620337
stop:45624338
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g46560
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48720AT Annotation by Michelle Graham. TAIR10: x-ray induced transcript 1 | chr5:19759233-19761621 FORWARD LENGTH=300 SoyBaseE_val: 1.00E-79ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006302GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007140GO-bp Annotation by Michelle Graham. GO Biological Process: male meiosis SoyBaseN/AISS
GO:0007143GO-bp Annotation by Michelle Graham. GO Biological Process: female meiosis SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0010165GO-bp Annotation by Michelle Graham. GO Biological Process: response to X-ray SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_I1KZ66UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ66_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6NLW5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein XRI1 n=2 Tax=Arabidopsis thaliana RepID=XRI1_ARATH SoyBaseE_val: 5.00E-77ISS

Expression Patterns of Glyma08g46560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g46560
ParalogEvidenceComments
Glyma18g35400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g46560 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g351100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g46560
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g46560
>Glyma08g46560.2   sequence type=transcript   gene model=Glyma08g46560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAACCAAACCAAGAAAATGGAAAACAAGACAGGAAGACAAAAGAGCACTAACCAGGGAACATATGTATACACACATGTAGTGAGAGAGAAAAAAAAAGGGTGGTTTTTGGTTTCTCTTTTGGTTCCTTTCTTATATGCCATATTTGCATCTGATGCAGCAATTCCTCTGTAACGGTTATTATTTTTGTGAAGGGGTTGGAGAGAAACACTGATCAGTGACTACTGCTTGGTTGCTACTACTGAAAATGGATTACAGCAATGACAACAAGTATGGAGCCATGGGATTGGCATAGGGAGGATTATTGTCTCCAAAGGAGTTTCAATTATGAAATTTCACCAGGGATATGGAATGGAGTTTCTCAAAATGAAGATCTTTCCTTTGTGTTCAATGATGAAACAACCCCAGTGAAGGCTTGTGGGGACTTTGCGTACAATGTCAATAATAGTGAGTCAAATAATGTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTTACCAAATTAAGAGAAGGCGGATGCTACAATTCAATTCTCAAGATGGGGGTCATTTACTCTCCAATGAACAGATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGCCAAAGGAGGATGTTTTCCCTGAATTTTCACAATGGGTGTCTGGGACACCAGGAAGTGCATCAGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTGTGTCCTGATGATTTGAATTTTTCTGGGGCAGATGAGGTTCAAGTTGATGTTGCAGATCTGGGCAACTTCCCACCAGCATGTGAACAAAATGTGGTTCAACATGGCTTCACTCAAACCCCCAAAAATATCATCTTCAAAGGTGGAAAATCATTTATAGAAACACCCACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCCGTTGTTGGAAAAACAAGAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACTAAAGGCTAAGCCTTAAGTGTTCACTACTGACTTCTTCTTGGGTCTGGCTTCATTTTCTGTATGTAAAACACCTGGTAATTTATAATTGTTATTGCAATTTTTGTTCTTATTGGCATCTATAAATAACACCACCTTACTACCTTAGTGTTTGTATCCTAGGTGAGGAATCTAGATGACTGTGGCATTTCTCTTGGTAGATGTTTTTCTTTGAGCTAACTCTGCAATGGGACTTTCGATCAGTCCCGATGCTTTAGCTCATATTAAAAACTAATGTAACTTGCTTTAGAATTTGAATCTATGATATATATGAGAATTAACATTTTAGTTCAAAC

>Glyma08g46560.3   sequence type=transcript   gene model=Glyma08g46560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAACCAAACCAAGAAAATGGAAAACAAGACAGGAAGACAAAAGAGCACTAACCAGGGAACATATGTATACACACATGTAGTGAGAGAGAAAAAAAAAGGGTGGTTTTTGGTTTCTCTTTTGGTTCCTTTCTTATATGCCATATTTGCATCTGATGCAGCAATTCCTCTGTAACGGTTATTATTTTTGTGAAGGGGTTGGAGAGAAACACTGATCAGTGACTACTGCTTGGTTGCTACTACTGAAAATGGATTACAGCAATGACAACAAGGAGCCATGGGATTGGCATAGGGAGGATTATTGTCTCCAAAGGAGTTTCAATTATGAAATTTCACCAGGGATATGGAATGGAGTTTCTCAAAATGAAGATCTTTCCTTTGTGTTCAATGATGAAACAACCCCAGTGAAGGCTTGTGGGGACTTTGCGTACAATGTCAATAATAGTGGGTTGATTTCAGAGTCAAATAATGTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTTACCAAATTAAGAGAAGGCGGATGCTACAATTCAATTCTCAAGATGGGGGTCATTTACTCTCCAATGAACAGATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGCCAAAGGAGGATGTTTTCCCTGAATTTTCACAATGGGTGTCTGGGACACCAGGAAGTGCATCAGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTGTGTCCTGATGATTTGAATTTTTCTGGGGCAGATGAGGTTCAAGTTGATGTTGCAGATCTGGGCAACTTCCCACCAGCATGTGAACAAAATGTGGTTCAACATGGCTTCACTCAAACCCCCAAAAATATCATCTTCAAAGGTGGAAAATCATTTATAGAAACACCCACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCCGTTGTTGGAAAAACAAGAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACTAAAGGCTAAGCCTTAAGTGTTCACTACTGACTTCTTCTTGGGTCTGGCTTCATTTTCTGTATGTAAAACACCTGGTAATTTATAATTGTTATTGCAATTTTTGTTCTTATTGGCATCTATAAATAACACCACCTTACTACCTTAGTGTTTGTATCCTAGGTGAGGAATCTAGATGACTGTGGCATTTCTCTTGGTAGATGTTTTTCTTTGAGCTAACTCTGCAATGGGACTTTCGATCAGTCCCGATGCTTTAGCTCATATTAAAAACTAATGTAACTTGCTTTAGAATTTGAATCTATGATATATATGAGAATTAACATTTTAGTTCAAAC
Coding sequences of Glyma08g46560
>Glyma08g46560.1   sequence type=CDS   gene model=Glyma08g46560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTACAGCAATGACAACAAGGAGCCATGGGATTGGCATAGGGAGGATTATTGTCTCCAAAGGAGTTTCAATTATGAAATTTCACCAGGGATATGGAATGGAGTTTCTCAAAATGAAGATCTTTCCTTTGTGTTCAATGATGAAACAACCCCAGTGAAGGCTTGTGGGGACTTTGCGTACAATGTCAATAATAGTGAGTCAAATAATGTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTTACCAAATTAAGAGAAGGCGGATGCTACAATTCAATTCTCAAGATGGGGGTCATTTACTCTCCAATGAACAGATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGCCAAAGGAGGATGTTTTCCCTGAATTTTCACAATGGGTGTCTGGGACACCAGGAAGTGCATCAGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTGTGTCCTGATGATTTGAATTTTTCTGGGGCAGATGAGGTTCAAGTTGATGTTGCAGATCTGGGCAACTTCCCACCAGCATGTGAACAAAATGTGGTTCAACATGGCTTCACTCAAACCCCCAAAAATATCATCTTCAAAGGTGGAAAATCATTTATAGAAACACCCACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCCGTTGTTGGAAAAACAAGAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACTAAAGGCTAA

>Glyma08g46560.2   sequence type=CDS   gene model=Glyma08g46560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACAAGTATGGAGCCATGGGATTGGCATAGGGAGGATTATTGTCTCCAAAGGAGTTTCAATTATGAAATTTCACCAGGGATATGGAATGGAGTTTCTCAAAATGAAGATCTTTCCTTTGTGTTCAATGATGAAACAACCCCAGTGAAGGCTTGTGGGGACTTTGCGTACAATGTCAATAATAGTGAGTCAAATAATGTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTTACCAAATTAAGAGAAGGCGGATGCTACAATTCAATTCTCAAGATGGGGGTCATTTACTCTCCAATGAACAGATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGCCAAAGGAGGATGTTTTCCCTGAATTTTCACAATGGGTGTCTGGGACACCAGGAAGTGCATCAGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTGTGTCCTGATGATTTGAATTTTTCTGGGGCAGATGAGGTTCAAGTTGATGTTGCAGATCTGGGCAACTTCCCACCAGCATGTGAACAAAATGTGGTTCAACATGGCTTCACTCAAACCCCCAAAAATATCATCTTCAAAGGTGGAAAATCATTTATAGAAACACCCACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCCGTTGTTGGAAAAACAAGAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACTAAAGGCTAA

>Glyma08g46560.3   sequence type=CDS   gene model=Glyma08g46560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTACAGCAATGACAACAAGGAGCCATGGGATTGGCATAGGGAGGATTATTGTCTCCAAAGGAGTTTCAATTATGAAATTTCACCAGGGATATGGAATGGAGTTTCTCAAAATGAAGATCTTTCCTTTGTGTTCAATGATGAAACAACCCCAGTGAAGGCTTGTGGGGACTTTGCGTACAATGTCAATAATAGTGGGTTGATTTCAGAGTCAAATAATGTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTTACCAAATTAAGAGAAGGCGGATGCTACAATTCAATTCTCAAGATGGGGGTCATTTACTCTCCAATGAACAGATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGCCAAAGGAGGATGTTTTCCCTGAATTTTCACAATGGGTGTCTGGGACACCAGGAAGTGCATCAGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTGTGTCCTGATGATTTGAATTTTTCTGGGGCAGATGAGGTTCAAGTTGATGTTGCAGATCTGGGCAACTTCCCACCAGCATGTGAACAAAATGTGGTTCAACATGGCTTCACTCAAACCCCCAAAAATATCATCTTCAAAGGTGGAAAATCATTTATAGAAACACCCACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCCGTTGTTGGAAAAACAAGAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACTAAAGGCTAA
Predicted protein sequences of Glyma08g46560
>Glyma08g46560.1   sequence type=predicted peptide   gene model=Glyma08g46560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYSNDNKEPWDWHREDYCLQRSFNYEISPGIWNGVSQNEDLSFVFNDETTPVKACGDFAYNVNNSESNNVQKESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLKGKEEPKEDVFPEFSQWVSGTPGSASASNYEDLESAEGWLADCFKDAEMQLCPDDLNFSGADEVQVDVADLGNFPPACEQNVVQHGFTQTPKNIIFKGGKSFIETPTKLAASVAYPFAFIKPCGAHGDVTLKEINQRILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRIHIEGGKGSITIMRTKG*

>Glyma08g46560.2   sequence type=predicted peptide   gene model=Glyma08g46560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTSMEPWDWHREDYCLQRSFNYEISPGIWNGVSQNEDLSFVFNDETTPVKACGDFAYNVNNSESNNVQKESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLKGKEEPKEDVFPEFSQWVSGTPGSASASNYEDLESAEGWLADCFKDAEMQLCPDDLNFSGADEVQVDVADLGNFPPACEQNVVQHGFTQTPKNIIFKGGKSFIETPTKLAASVAYPFAFIKPCGAHGDVTLKEINQRILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRIHIEGGKGSITIMRTKG*

>Glyma08g46560.3   sequence type=predicted peptide   gene model=Glyma08g46560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYSNDNKEPWDWHREDYCLQRSFNYEISPGIWNGVSQNEDLSFVFNDETTPVKACGDFAYNVNNSGLISESNNVQKESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLKGKEEPKEDVFPEFSQWVSGTPGSASASNYEDLESAEGWLADCFKDAEMQLCPDDLNFSGADEVQVDVADLGNFPPACEQNVVQHGFTQTPKNIIFKGGKSFIETPTKLAASVAYPFAFIKPCGAHGDVTLKEINQRILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRIHIEGGKGSITIMRTKG*






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