Glyma08g46550 - SoyBase

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Report for Sequence Feature Glyma08g46550

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45613655
stop:	45618439
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07130	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 15 \| chr3:2255763-2257981 REVERSE LENGTH=532	SoyBase	E_val: 0	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_Q93XG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytase n=2 Tax=Glycine max RepID=Q93XG4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93XG4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phytase n=2 Tax=Glycine max RepID=Q93XG4_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g46550

Locus	Gene Symbol	Protein Name
	PAP19	Purple acid phosphatase 19 gene
	PAP19	Purple acid phosphatase gene 19

Expression Patterns of Glyma08g46550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g46550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g351000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g46550

Limit To All Plant Sequences

>Glyma08g46550.2   sequence type=transcript   gene model=Glyma08g46550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAACATACCCTAAGGATTTCAAAGAGATTATATTTCAGATTATCTTCTTTTGGCCAATTCTGATTCTCTTTGGTTAAAAAAATGATAGTATAAAATTAAAACTGCCACGTGACGTTCCCACGGCAAACGGTTCTGTACTCTTACACTGTCAGTCTCAGTCTCAGTTCCAGTTCCAAGATATTCCGTACTCTCCACTTCTTTTTACTTTTCTCACACGCAACCAAATCCATCCGTTTCAACAAACACAAAACCACGTTCCGCGTTTGGATTCTCCAATGGCGTCAATTACTTTTTCTCTTCTTCAATTTCATCGTGCTCCTATTCTTCTGCTAATTCTGCTCGCGGGTTTCGGTCACTGCCATATTCCGTCAACCCTCGAAGGTCCCTTTGATCCCGTCACCGTTCCGTTCGACCCCGCCTTGCGCGGCGTCGCCGTCGACTTGCCGGAAACCGATCCTCGAGTTCGCCGCCGCGTCCGGGGTTTCGAGCCCGAACAGATTTCGGTTTCTCTCTCTACCTCCCATGACTCCGTTTGGATATCTTGGGTTACAGGGGAGTTCCAAATAGGTCTCGACATCAAGCCTTTAGACCCTAAAACTGTATCAAGTGTTGTTCAATATGGAACTTCAAGATTTGAATTAGTGCATGAAGCTAGAGGCCAGTCTCTCATCTACAACCAGCTCTATCCTTTTGAAGGCCTTCAGAATTACACATCTGGAATCATCCATCACGTTCAACTCAAAGGATTGGAACCAAGCACACTATACTATTATCAATGTGGAGATCCTTCATTGCAAGCCATGAGTGATATATACTATTTCAGGACCATGCCAATTTCTGGTTCAAAGAGCTACCCAGGCAAAGTAGCTGTAGTAGGAGATCTTGGTCTTACTTATAATACAACTACTACCATCGGTCACCTGACTAGTAATGAACCTGATCTTCTTCTATTGATTGGTGATGTAACCTACGCGAATCTGTACCTCACAAATGGAACTGGCTCTGATTGTTATAGTTGCTCGTTTCCACTAACTCCTATACATGAAACCTACCAGCCTCGATGGGATTATTGGGGAAGGTTTATGCAGAATCTAGTTTCTAACGTTCCAATAATGGTGGTAGAAGGAAATCATGAAATAGAAAAACAGGCTGAAAACAGGACATTTGTGGCCTACAGTTCTAGGTTTGCATTCCCCTCTCAAGAAAGTGGATCTTCATCTACATTCTACTATTCTTTCAATGCTGGAGGCATTCATTTTATTATGCTTGGGGCTTATATTAACTATGATAAAACGGCTGAACAATACAAGTGGTTGGAGAGAGATCTGGAAAATGTTGATAGATCAATAACTCCCTGGCTTGTAGTTACTTGGCATCCACCATGGTATAGTTCTTATGAAGCCCATTACAGAGAAGCAGAGTGCATGAGGGTGGAGATGGAGGACCTATTATACGCATATGGTGTGGATATAATATTTAATGGACATGTTCATGCCTATGAGAGGTCAAACCGAGTTTACAATTACAATTTAGATCCATGTGGTCCTGTATATATTACAGTTGGGGATGGGGGCAACAGAGAGAAGATGGCAATCAAATTCGCAGACGAGCCTGGTCATTGTCCCGATCCATTAAGTACTCCTGATCCTTATATGGGTGGCTTTTGTGCAACAAATTTTACGTTTGGTACAAAAGTGAGTAAGTTTTGTTGGGATCGCCAGCCAGATTACAGTGCTTTCAGAGAAAGTAGCTTTGGCTATGGGATTCTAGAGGTGAAAAATGAAACTTGGGCTTTGTGGAGTTGGTATCGTAATCAGGACTCTTACAAGGAAGTTGGGGATCAAATTTACATAGTGAGACAACCTGATATATGCCCCATCCATCAAAGGGTGAACATAGATTGCATTGCTTCGATATAAGAGCCACGAGGAGGAGTTCATTTGCTGTCATTGATGAAAATGTCTCAATAGCTGAATATAAACCTCCGTGGAAAACCTAATAGTGCTAAATGTCACTACTGGGTTGAGTAGAGTAGGCAGACGATCTATCTTTCAAAAGATGTTAACGCTCCTACTAGTCTACTACTAGGGCCCAATATTACAGTAAACTGTGTTGTTTGTTAACTATCAATATACAGAGTGTGAAACATTAAAATTGTAAATCCTTAATATTTTGCTAAATGAGAATGAAAATTGCCTTGGCGTAAA

Coding sequences of Glyma08g46550

Limit To All Plant Sequences

>Glyma08g46550.1   sequence type=CDS   gene model=Glyma08g46550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCAATTACTTTTTCTCTTCTTCAATTTCATCGTGCTCCTATTCTTCTGCTAATTCTGCTCGCGGGTTTCGGTCACTGCCATATTCCGTCAACCCTCGAAGGTCCCTTTGATCCCGTCACCGTTCCGTTCGACCCCGCCTTGCGCGGCGTCGCCGTCGACTTGCCGGAAACCGATCCTCGAGTTCGCCGCCGCGTCCGGGGTTTCGAGCCCGAACAGATTTCGGTTTCTCTCTCTACCTCCCATGACTCCGTTTGGATATCTTGGGTTACAGGGGAGTTCCAAATAGGTCTCGACATCAAGCCTTTAGACCCTAAAACTGTATCAAGTGTTGTTCAATATGGAACTTCAAGATTTGAATTAGTGCATGAAGCTAGAGGCCAGTCTCTCATCTACAACCAGCTCTATCCTTTTGAAGGCCTTCAGAATTACACATCTGGAATCATCCATCACGTTCAACTCAAAGGATTGGAACCAAGCACACTATACTATTATCAATGTGGAGATCCTTCATTGCAAGCCATGAGTGATATATACTATTTCAGGACCATGCCAATTTCTGGTTCAAAGAGCTACCCAGGCAAAGTAGCTGTAGTAGGAGATCTTGGTCTTACTTATAATACAACTACTACCATCGGTCACCTGACTAGTAATGAACCTGATCTTCTTCTATTGATTGGTGATGTAACCTACGCGAATCTGTACCTCACAAATGGAACTGGCTCTGATTGTTATAGTTGCTCGTTTCCACTAACTCCTATACATGAAACCTACCAGCCTCGATGGGATTATTGGGGAAGGTTTATGCAGAATCTAGTTTCTAACGTTCCAATAATGGTGGTAGAAGGAAATCATGAAATAGAAAAACAGGCTGAAAACAGGACATTTGTGGCCTACAGTTCTAGGTTTGCATTCCCCTCTCAAGAAAGTGGATCTTCATCTACATTCTACTATTCTTTCAATGCTGGAGGCATTCATTTTATTATGCTTGGGGCTTATATTAACTATGATAAAACGGCTGAACAATACAAGTGGTTGGAGAGAGATCTGGAAAATGTTGATAGATCAATAACTCCCTGGCTTGTAGTTACTTGGCATCCACCATGGTATAGTTCTTATGAAGCCCATTACAGAGAAGCAGAGTGCATGAGGGTGGAGATGGAGGACCTATTATACGCATATGGTGTGGATATAATATTTAATGGACATGTTCATGCCTATGAGAGGTCAAACCGAGTTTACAATTACAATTTAGATCCATGTGGTCCTGTATATATTACAGTTGGGGATGGGGGCAACAGAGAGAAGATGGCAATCAAATTCGCAGACGAGCCTGGTCATTGTCCCGATCCATTAAGTACTCCTGATCCTTATATGGGTGGCTTTTGTGCAACAAATTTTACGTTTGGTACAAAAGTGAGTAAGTTTTGTTGGGATCGCCAGCCAGATTACAGTGCTTTCAGAGAAAGTAGCTTTGGCTATGGGATTCTAGAGGTACCATTCCTTTCCCTACCCCATGTCCCCACCCCAAGCATGGTGGTACAAATGTTATTTATATTCAATAAATTGATATATTTGTAG

>Glyma08g46550.2   sequence type=CDS   gene model=Glyma08g46550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCAATTACTTTTTCTCTTCTTCAATTTCATCGTGCTCCTATTCTTCTGCTAATTCTGCTCGCGGGTTTCGGTCACTGCCATATTCCGTCAACCCTCGAAGGTCCCTTTGATCCCGTCACCGTTCCGTTCGACCCCGCCTTGCGCGGCGTCGCCGTCGACTTGCCGGAAACCGATCCTCGAGTTCGCCGCCGCGTCCGGGGTTTCGAGCCCGAACAGATTTCGGTTTCTCTCTCTACCTCCCATGACTCCGTTTGGATATCTTGGGTTACAGGGGAGTTCCAAATAGGTCTCGACATCAAGCCTTTAGACCCTAAAACTGTATCAAGTGTTGTTCAATATGGAACTTCAAGATTTGAATTAGTGCATGAAGCTAGAGGCCAGTCTCTCATCTACAACCAGCTCTATCCTTTTGAAGGCCTTCAGAATTACACATCTGGAATCATCCATCACGTTCAACTCAAAGGATTGGAACCAAGCACACTATACTATTATCAATGTGGAGATCCTTCATTGCAAGCCATGAGTGATATATACTATTTCAGGACCATGCCAATTTCTGGTTCAAAGAGCTACCCAGGCAAAGTAGCTGTAGTAGGAGATCTTGGTCTTACTTATAATACAACTACTACCATCGGTCACCTGACTAGTAATGAACCTGATCTTCTTCTATTGATTGGTGATGTAACCTACGCGAATCTGTACCTCACAAATGGAACTGGCTCTGATTGTTATAGTTGCTCGTTTCCACTAACTCCTATACATGAAACCTACCAGCCTCGATGGGATTATTGGGGAAGGTTTATGCAGAATCTAGTTTCTAACGTTCCAATAATGGTGGTAGAAGGAAATCATGAAATAGAAAAACAGGCTGAAAACAGGACATTTGTGGCCTACAGTTCTAGGTTTGCATTCCCCTCTCAAGAAAGTGGATCTTCATCTACATTCTACTATTCTTTCAATGCTGGAGGCATTCATTTTATTATGCTTGGGGCTTATATTAACTATGATAAAACGGCTGAACAATACAAGTGGTTGGAGAGAGATCTGGAAAATGTTGATAGATCAATAACTCCCTGGCTTGTAGTTACTTGGCATCCACCATGGTATAGTTCTTATGAAGCCCATTACAGAGAAGCAGAGTGCATGAGGGTGGAGATGGAGGACCTATTATACGCATATGGTGTGGATATAATATTTAATGGACATGTTCATGCCTATGAGAGGTCAAACCGAGTTTACAATTACAATTTAGATCCATGTGGTCCTGTATATATTACAGTTGGGGATGGGGGCAACAGAGAGAAGATGGCAATCAAATTCGCAGACGAGCCTGGTCATTGTCCCGATCCATTAAGTACTCCTGATCCTTATATGGGTGGCTTTTGTGCAACAAATTTTACGTTTGGTACAAAAGTGAGTAAGTTTTGTTGGGATCGCCAGCCAGATTACAGTGCTTTCAGAGAAAGTAGCTTTGGCTATGGGATTCTAGAGGTGAAAAATGAAACTTGGGCTTTGTGGAGTTGGTATCGTAATCAGGACTCTTACAAGGAAGTTGGGGATCAAATTTACATAGTGAGACAACCTGATATATGCCCCATCCATCAAAGGGTGAACATAGATTGCATTGCTTCGATATAA

Predicted protein sequences of Glyma08g46550

Limit To All Plant Sequences

>Glyma08g46550.1   sequence type=predicted peptide   gene model=Glyma08g46550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASITFSLLQFHRAPILLLILLAGFGHCHIPSTLEGPFDPVTVPFDPALRGVAVDLPETDPRVRRRVRGFEPEQISVSLSTSHDSVWISWVTGEFQIGLDIKPLDPKTVSSVVQYGTSRFELVHEARGQSLIYNQLYPFEGLQNYTSGIIHHVQLKGLEPSTLYYYQCGDPSLQAMSDIYYFRTMPISGSKSYPGKVAVVGDLGLTYNTTTTIGHLTSNEPDLLLLIGDVTYANLYLTNGTGSDCYSCSFPLTPIHETYQPRWDYWGRFMQNLVSNVPIMVVEGNHEIEKQAENRTFVAYSSRFAFPSQESGSSSTFYYSFNAGGIHFIMLGAYINYDKTAEQYKWLERDLENVDRSITPWLVVTWHPPWYSSYEAHYREAECMRVEMEDLLYAYGVDIIFNGHVHAYERSNRVYNYNLDPCGPVYITVGDGGNREKMAIKFADEPGHCPDPLSTPDPYMGGFCATNFTFGTKVSKFCWDRQPDYSAFRESSFGYGILEVPFLSLPHVPTPSMVVQMLFIFNKLIYL*

>Glyma08g46550.2   sequence type=predicted peptide   gene model=Glyma08g46550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASITFSLLQFHRAPILLLILLAGFGHCHIPSTLEGPFDPVTVPFDPALRGVAVDLPETDPRVRRRVRGFEPEQISVSLSTSHDSVWISWVTGEFQIGLDIKPLDPKTVSSVVQYGTSRFELVHEARGQSLIYNQLYPFEGLQNYTSGIIHHVQLKGLEPSTLYYYQCGDPSLQAMSDIYYFRTMPISGSKSYPGKVAVVGDLGLTYNTTTTIGHLTSNEPDLLLLIGDVTYANLYLTNGTGSDCYSCSFPLTPIHETYQPRWDYWGRFMQNLVSNVPIMVVEGNHEIEKQAENRTFVAYSSRFAFPSQESGSSSTFYYSFNAGGIHFIMLGAYINYDKTAEQYKWLERDLENVDRSITPWLVVTWHPPWYSSYEAHYREAECMRVEMEDLLYAYGVDIIFNGHVHAYERSNRVYNYNLDPCGPVYITVGDGGNREKMAIKFADEPGHCPDPLSTPDPYMGGFCATNFTFGTKVSKFCWDRQPDYSAFRESSFGYGILEVKNETWALWSWYRNQDSYKEVGDQIYIVRQPDICPIHQRVNIDCIASI*

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