Glyma08g46420 - SoyBase

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Report for Sequence Feature Glyma08g46420

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45531198
stop:	45536828
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07180	AT	Annotation by Michelle Graham. TAIR10: GPI transamidase component PIG-S-related \| chr3:2282455-2285475 REVERSE LENGTH=599	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2459	KOG	GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis	JGI		ISS
PTHR21072	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21072:SF5	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF10510	PFAM	Phosphatidylinositol-glycan biosynthesis class S protein	JGI		ISS
UniRef100_I1KZ53	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KZ53_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SFU8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T1B9.16 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SFU8_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g46420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g46420

Paralog	Evidence	Comments
Glyma18g35940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g46420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g349700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g46420

Limit To All Plant Sequences

>Glyma08g46420.1   sequence type=CDS   gene model=Glyma08g46420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAATCTCCAATTCGCCACCGACTTCAAATCCCGTCGAAGAAAACACCCAAACTCCGAAAACCACGCGAAACACAAAACCCGGCGTCAAACGCCTCATCATCAGCGTCACTGTGCTCTTCTCATTCATCCTAGGTTTTCCTCTTCTGTGGAAATCCGTTAAAATCTACCGCGCGCCGCTCCCGTTCGATCGAGTCGACTCCTTCTCCTCCCAAATCGAATCCAAACCCTTGTCCTTCCCATGCCGCTTTCTAGCCATATTCATCGGCTTCGATTTCATGGTTTCAAACGGAAATGTAGGAGCCGCGATTGAGAGAAAAATGTCGGACCTAAGTCACGGCGGCGATTGCGGCGGATGTGGTGGTAACTACTCTGTTTCCGTGGCGGTGGGCGGGGGAGGCATTGATGCGGTCTATTTTGGCGGGAAGTTGCGGGGTAATGACGAGGATGCTGATGAATTGGTGAAGAGTGTGGTGAGTGAGTATGGAGGAGGGAATATGTATAGTGTTGTGGTGGTGAATGAAGAGGGGGAGGTGAGGAGTGTGGTGGGGAAGCATAGGCATGCGTGGATCGTGGGGCGGGTTGAGGAGGAGGAGGCGGTGTGGCGTGCGGCTGAGATCTTTGTAGAGGTTTTTGTTAATGGTCGGGACGAGGAGGGTTCGGTTCGCAGCGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTCTCTTTCAGTTTGCTCAATGCAGACCCTCGAGATTGGATATATGATTGGAATTTTCGCGAAATTGATGAGACTTTGTTGTGGCCTGTGATTGAGGCTTTACAACCTATAGCAAACATCACTGTTGAAAGCCAGGTTTTGTACCATACACCAAAGTCTTCATTTTCTAACTGGGATGATAAGCATGGCAGCCACATATTTAGAACCGAGGATCTTCCTTTCTTTGTGAATTCAAATGAGTGGCACTTGGATACTTCTGTTGCAGCTGGAGGAAGGTCAAAAGTATTGCAACTCGTGGTGTATATACCATCTGCAAAGGAGTGTCCTCTTCAACTGGAGCTTTCAAGTGGGGAGATCTCTAAAACTAACGGCTTTATATCTCCAATGTGGGGAGGTGTCGTTGTCTGGAATCCCCGAAGCTGTATAAAAGATTTGGAAAGTAGGGATCCAGTTAGACATACGATTTCTTCTCAGGATCTCCAGAAGCTTTTTGAAGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCTGATAACCTTTATGTTGGTAAGTCAGGTGCATCCATTCTCCTAGGCAGTGAAAGAGGTTTCACAGAATGGGAGTTGGATGTTTTGTCACGGAAGCATATATGCTTTAATCTTCAGTCATGTGCTACTACGCTTGGATCACTTTCTAGATTGGTACAGTCATTGCCAAGGATGATTATCATGGATGAGATTGGAAAACAGGTTAAGTTTTCTCTTGAGGCTGCAAAATCTGCTCAAAGTAATGCATCTATTGGAATATATGATGCTTCAGCTGTATCATCAAGACAATCAAGATCTCTGGCAGAGGATGCCTTTTTTCATCCATCAATTATGTCCATAAGCTATTATTCGTTTGAGCATTGTTTTGCCATCTATTCGCCATTTTTTCTGCCAGTTACTATGCATGTCCTCCTAGCTGCTTTACGAGAATGGAAAAGGTACAAGCAAGAAAAAAAGAAGTACTTGGCATCGAAGGACAAAGTAAAAGTTTCATAA

Predicted protein sequences of Glyma08g46420

Limit To All Plant Sequences

>Glyma08g46420.1   sequence type=predicted peptide   gene model=Glyma08g46420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEISNSPPTSNPVEENTQTPKTTRNTKPGVKRLIISVTVLFSFILGFPLLWKSVKIYRAPLPFDRVDSFSSQIESKPLSFPCRFLAIFIGFDFMVSNGNVGAAIERKMSDLSHGGDCGGCGGNYSVSVAVGGGGIDAVYFGGKLRGNDEDADELVKSVVSEYGGGNMYSVVVVNEEGEVRSVVGKHRHAWIVGRVEEEEAVWRAAEIFVEVFVNGRDEEGSVRSEFMPVGADGRIVLSFSLLNADPRDWIYDWNFREIDETLLWPVIEALQPIANITVESQVLYHTPKSSFSNWDDKHGSHIFRTEDLPFFVNSNEWHLDTSVAAGGRSKVLQLVVYIPSAKECPLQLELSSGEISKTNGFISPMWGGVVVWNPRSCIKDLESRDPVRHTISSQDLQKLFEVLMGQLRQLLGLKSDNLYVGKSGASILLGSERGFTEWELDVLSRKHICFNLQSCATTLGSLSRLVQSLPRMIIMDEIGKQVKFSLEAAKSAQSNASIGIYDASAVSSRQSRSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVTMHVLLAALREWKRYKQEKKKYLASKDKVKVS*

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