Glyma08g46400 - SoyBase

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Report for Sequence Feature Glyma08g46400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45517042
stop:	45522388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25070	AT	Annotation by Michelle Graham. TAIR10: RPM1 interacting protein 4 \| chr3:9132458-9133747 FORWARD LENGTH=211	SoyBase	E_val: 2.00E-40	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0010204	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent	SoyBase	N/A	ISS
GO:0034051	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF05627	PFAM	Cleavage site for pathogenic type III effector avirulence factor Avr	JGI		ISS
UniRef100_C6TNP3	UniRef	Annotation by Michelle Graham. Best UniRef hit: RIN4d protein n=1 Tax=Glycine max RepID=C6TNP3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6TNP3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RIN4d protein n=1 Tax=Glycine max RepID=C6TNP3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g46400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g46400

Paralog	Evidence	Comments
Glyma18g36000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g46400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g349500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g46400

Limit To All Plant Sequences

>Glyma08g46400.2   sequence type=transcript   gene model=Glyma08g46400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAATTACTAGAATGAAAAACATATTTAAGTGACGTAACAATGTGAAGGCCGCGACTCTAGAAGGAGAAGAAGGACTTTGAAGCAGAAGAAACATAGAATTTACAGAGAGAAAGAAAATGTTCAAACATTACCGGTGGCCCCGGTTAGTGGTTCATAAACCTTTCTCTAAGCTTCCGACTCTCTCTCTCTTACGGGGTCTTTGCAGTCCGTGGAAGAGCTTGTTGGGTTATCTCAGCTTTCACCTTTCCAGGCTCTGATTCAAAGAAAAATCTCAACTTCCTTCAACAATTCATCTCTACAATTTCTGGATAGTGTCTTTTTTTTAGCAAGAATGGCTGAGAGTGAAGACAACGTTTTAGACACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGTCTGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCGGACATAGTTTCTTCTGCTGACCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGAACAACACATGAGTTACAAAAGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCGGTGATTCTTCCCATCGAGGTCATGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGCCTGAGCACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGATAGCAGCCATGGTACCCCAGGAAGGTCCCGATTGAGACCATCTTACCGAGGGGATGAAACTCCTGATGAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAAGAGAAACAAGTGGGGGCTGGACACGTGCCAGGCACACCTAATGGGAGACAATATGCTGCTCGGAATCAACGTGCCAACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGATTTATGTGAAGCATGAATTATAATCTGAACTGAAGAGATAAAAATAGTGTTGTGAATGGCCATGAGGTGTGTGTAGCACTTGTAAATATTCAAGGCTCTGTCTTCCTAGAAAAAAATCATTGAAGAACAATTGTCTTAATTTTTTGCCTTTTTCTTCCTCTGTCTTTTGGTCAATAGAGACACTTTGTGTGGAAGATTGTGATTTGTCCTGTTTATCTATTTTTTATTTTGTTATGTAATTGCCACGCTTTATAACTCGATTTGTCTGTATTTAGCTGGGAAATACAAGATTTATTATACAATTCTTTTGGTTGTGATTCTAGTCTTATTGTGTTGATCTCGTGTAGCTTAACTCAAATTGATCCTATTCAATAACAAACTGTTTCAAG

Coding sequences of Glyma08g46400

Limit To All Plant Sequences

>Glyma08g46400.1   sequence type=CDS   gene model=Glyma08g46400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAACATTCTAATGTTCCAAAGTTTGGCAATCAGGAGAGTGAAGACAACGTTTTAGACACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGTCTGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCGGACATAGTTTCTTCTGCTGACCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGAACAACACATGAGTTACAAAAGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCGGTGATTCTTCCCATCGAGGTCATGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGCCTGAGCACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGATAGCAGCCATGGTACCCCAGGAAGGTCCCGATTGAGACCATCTTACCGAGGGGATGAAACTCCTGATGAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAAGAGAAACAAGTGGGGGCTGGACACGTGCCAGGCACACCTAATGGGAGACAATATGCTGCTCGGAATCAACGTGCCAACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGA

>Glyma08g46400.2   sequence type=CDS   gene model=Glyma08g46400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGAGTGAAGACAACGTTTTAGACACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGTCTGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCGGACATAGTTTCTTCTGCTGACCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGAACAACACATGAGTTACAAAAGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCGGTGATTCTTCCCATCGAGGTCATGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGCCTGAGCACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGATAGCAGCCATGGTACCCCAGGAAGGTCCCGATTGAGACCATCTTACCGAGGGGATGAAACTCCTGATGAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAAGAGAAACAAGTGGGGGCTGGACACGTGCCAGGCACACCTAATGGGAGACAATATGCTGCTCGGAATCAACGTGCCAACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGA

Predicted protein sequences of Glyma08g46400

Limit To All Plant Sequences

>Glyma08g46400.1   sequence type=predicted peptide   gene model=Glyma08g46400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQHSNVPKFGNQESEDNVLDTAHSDKAQKGQSGSKMINPNDTKENSDIVSSADLPHSKPRVHSEDPSGKGSVRTTHELQKSREDGDPKQFTDSPARHGGGDSSHRGHGVGSADNRKRPSRQSTGPEHNIDRSPLHRQAKTPGRDSPSWEGKNSYDSSHGTPGRSRLRPSYRGDETPDEGAAVPKFGEWDESNPASADGYTHIFNKVREEKQVGAGHVPGTPNGRQYAARNQRANDKAQSCCFCWGKK*

>Glyma08g46400.2   sequence type=predicted peptide   gene model=Glyma08g46400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESEDNVLDTAHSDKAQKGQSGSKMINPNDTKENSDIVSSADLPHSKPRVHSEDPSGKGSVRTTHELQKSREDGDPKQFTDSPARHGGGDSSHRGHGVGSADNRKRPSRQSTGPEHNIDRSPLHRQAKTPGRDSPSWEGKNSYDSSHGTPGRSRLRPSYRGDETPDEGAAVPKFGEWDESNPASADGYTHIFNKVREEKQVGAGHVPGTPNGRQYAARNQRANDKAQSCCFCWGKK*

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