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Report for Sequence Feature Glyma08g46345

Feature Type:gene_model
Chromosome:Gm08
Start:45483522
stop:45490565
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07210AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:2293000-2295119 REVERSE LENGTH=547 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_D7NXT8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein 1 n=1 Tax=Triticum aestivum RepID=D7NXT8_WHEAT SoyBaseE_val: 5.00E-136ISS
UniRef100_I1N274UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N274_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g46345 not represented in the dataset

Glyma08g46345 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g36150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g349100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g46345.1   sequence type=CDS   gene model=Glyma08g46345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGGGGTGTGAGTCTGAGGGAATCATGGTGTTTCTGCAAAGGGGTCAGCAAGTCTGAGAGAATGAAAGCTGCTATTTTTACAGGGAAGGCTCAGGCCATGGCCACAATCACCGCCACCGCCTCCACCGCCGCCGTGCCTAATGGGGCTTTCGGCACCGGGTTTTTAATCCACCGGAACCTTCTATTGACCACTCACGCCAATCTTCCGTCGGTGGTCGCCGCCGACACCGCTGAGATCCGGCTTCACAATGGTGTGGCTGCCACTCTTGTTCCTCAGAGGTTTTTCATTTCAAGTTCTGTATTAGATCTTACGATTGTGGGTTTAGATGACGCGGATGGAGACTCAAATGCACAGGGTCAGTGCCCTCACTACTTGAAGACCAGTTGTAAAGCCAATCTAGATCTGGGAAGTGCAGTTTACCTTTTAGGCTACACAGAGAAACAGGAGCTCACTGTTGGTGAAGGAAAGGTGGTCATTGCCACTGATAATCTCATAAAACTGTCAACTGATGGAATTCAATGGGGTCCCGGTTCTGCAGGTTTTGATGTGCATGGCAATCTAGCTTTTATGATATGTGATCCTATGAAATTAGCCACATCACCAAATACCAAATCGCCTTCAACTTCAACGTCATCATCATCATCCTCTTGGAAGAAAGACCACCCCATGCAATTTGGCATACCAATTCCTGTCATATGTGATTGGTTAAACCAGCATTGGGAAGGCAACCTTGATGAGCTTAACAAGCCAAAATTACCAATCATGCGATTGATGTCAACCGGCCCAAAGAGCGAGCACTCGTGTGCTTCCTTCACCCTGCGGCAAGTTTTCAAGTCAACTGAGGGCGATGATGATGACACCCCTTCCTCATCAAACAATGCCTCAAAGGCAAGGGATCAGGGACCAAGCTCTTCTGCTGCTACCAACGCAGTTGAAGAAGAAAGCTTGATCACTAATCCCAATGTTGCACATGTACAGGGAATCCCCACTCCCGAAATATACGAATCACCTAGAGTAACTGCTGTCCCACTCAGAAGGAAAGAAAACATACCATTACAGCTTTTGGACATCAATTTTCCTCCAAGGACTTCCAAACCTGCAGTTTTTCCACAATCATCCAAACCAAAAACTGCTGAAAATCTTGCCAAAGAACCTTTGCCCGAAAACCAAGTAGAAGGAGAACAAAACAAGCACACAAGGCCAACAACTCCTATTCCAGATGTTTCCTCAACAGGTTCTGTCAATGGAGCAGCTCAAAGTGAGGTTCAGTCTAGTTCGTCTCCCGTGGAAGTATATGAGATGCAAAATGGATACAGCAGCGAAGGAGAGACCATGTACTCGGCAGAAACAGCTGAGTCTCGCAACTACACAAGCCCCAGAGAGTTTAACTTTCAACAAGTGGGAAGGAGCCAGAGTTGTGTGAGTTACAATAGGTGGGGTGCTGCACCAAGAAGCCAAGTTGCACGCGGGATGATGGTGGAAAATCAGAGAAGCTTCATGCATGTGAAGAGAATGTATTCACAAGGTGCAACAACTTCTCAGCGAAGCAATGACTATTTCAGCCCCACTGTCTCCTCAATCATGAAACGTAACAGCGGCTCAAGCAAGCCACCACCCCGGCAAAGTGCTGTTCATTCTCCTTCACCCAGATGGATGTTTTGA

>Glyma08g46345.1   sequence type=predicted peptide   gene model=Glyma08g46345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGGVSLRESWCFCKGVSKSERMKAAIFTGKAQAMATITATASTAAVPNGAFGTGFLIHRNLLLTTHANLPSVVAADTAEIRLHNGVAATLVPQRFFISSSVLDLTIVGLDDADGDSNAQGQCPHYLKTSCKANLDLGSAVYLLGYTEKQELTVGEGKVVIATDNLIKLSTDGIQWGPGSAGFDVHGNLAFMICDPMKLATSPNTKSPSTSTSSSSSSWKKDHPMQFGIPIPVICDWLNQHWEGNLDELNKPKLPIMRLMSTGPKSEHSCASFTLRQVFKSTEGDDDDTPSSSNNASKARDQGPSSSAATNAVEEESLITNPNVAHVQGIPTPEIYESPRVTAVPLRRKENIPLQLLDINFPPRTSKPAVFPQSSKPKTAENLAKEPLPENQVEGEQNKHTRPTTPIPDVSSTGSVNGAAQSEVQSSSSPVEVYEMQNGYSSEGETMYSAETAESRNYTSPREFNFQQVGRSQSCVSYNRWGAAPRSQVARGMMVENQRSFMHVKRMYSQGATTSQRSNDYFSPTVSSIMKRNSGSSKPPPRQSAVHSPSPRWMF*







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