SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma08g46290

Feature Type:gene_model
Chromosome:Gm08
Start:45456545
stop:45459629
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18593AT Annotation by Michelle Graham. TAIR10: dual specificity protein phosphatase-related | chr4:10238154-10238698 FORWARD LENGTH=142 SoyBaseE_val: 3.00E-58ISS
GO:0000188GO-bp Annotation by Michelle Graham. GO Biological Process: inactivation of MAPK activity SoyBaseN/AISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0043405GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of MAP kinase activity SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008138GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity SoyBaseN/AISS
GO:0033549GO-mf Annotation by Michelle Graham. GO Molecular Function: MAP kinase phosphatase activity SoyBaseN/AISS
PTHR10159Panther DUAL SPECIFICITY PROTEIN PHOSPHATASE JGI ISS
PTHR10159:SF129Panther MAP KINASE PHOSPHATASE JGI ISS
UniRef100_I1KZ43UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ43_SOYBN SoyBaseE_val: 2.00E-92ISS
UniRef100_O49527UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pollen-specific protein - like n=1 Tax=Arabidopsis thaliana RepID=O49527_ARATH SoyBaseE_val: 8.00E-42ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g33556 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g348700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g46290.1   sequence type=CDS   gene model=Glyma08g46290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAGCTGGTAGCTCTCAGACAGAGACAACGACCAAACCTCCTCAACTTATATACCGGTGTAAGAAATGCAGAAGAATTGTTGCTTCAGTGGAAAATATAGTTTCCCATGAGCACGGGAAAGGAGAATCAAGCTTCAAGTGGAAAAAGAGAAGCAGTCAATCCTGGGAAACGGAAAAGCAATCAGTTGATTGCACCTCAGTATTTGTTGAGCCCATGAAATGGATGCAAGCAGTACACGAAGGTCATGTGGAGGATAAACTTCTCTGTATGGGTTGTAATGCTCGTTTGGGTAACTTCAACTGGGCCGGTATGCAGTGCAGCTGTGGAGCCTGGGTTAACCCTGCGTTTCAGCTGCATAAAAGCCGATTAGATGAGTGCAATATGTAA

>Glyma08g46290.1   sequence type=predicted peptide   gene model=Glyma08g46290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEAGSSQTETTTKPPQLIYRCKKCRRIVASVENIVSHEHGKGESSFKWKKRSSQSWETEKQSVDCTSVFVEPMKWMQAVHEGHVEDKLLCMGCNARLGNFNWAGMQCSCGAWVNPAFQLHKSRLDECNM*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo