Report for Sequence Feature Glyma08g46290
Feature Type: gene_model
Chromosome: Gm08
Start: 45456545
stop: 45459629
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g46290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G18593 AT
Annotation by Michelle Graham. TAIR10: dual specificity protein phosphatase-related | chr4:10238154-10238698 FORWARD LENGTH=142
SoyBase E_val: 3.00E-58 ISS
GO:0000188 GO-bp
Annotation by Michelle Graham. GO Biological Process: inactivation of MAPK activity
SoyBase N/A ISS
GO:0006470 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation
SoyBase N/A ISS
GO:0043405 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of MAP kinase activity
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008138 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity
SoyBase N/A ISS
GO:0033549 GO-mf
Annotation by Michelle Graham. GO Molecular Function: MAP kinase phosphatase activity
SoyBase N/A ISS
PTHR10159 Panther
DUAL SPECIFICITY PROTEIN PHOSPHATASE
JGI ISS
PTHR10159:SF129 Panther
MAP KINASE PHOSPHATASE
JGI ISS
UniRef100_I1KZ43 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ43_SOYBN
SoyBase E_val: 2.00E-92 ISS
UniRef100_O49527 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pollen-specific protein - like n=1 Tax=Arabidopsis thaliana RepID=O49527_ARATH
SoyBase E_val: 8.00E-42 ISS
Expression Patterns of Glyma08g46290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g46290
Paralog Evidence Comments
Glyma18g33556 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g46290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g348700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g46290
Coding sequences of Glyma08g46290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g46290.1 sequence type=CDS gene model=Glyma08g46290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAAGCTGGTAGCTCTCAGACAGAGACAACGACCAAACCTCCTCAACTTATATACCGGTGTAAGAAATGCAGAAGAATTGTTGCTTCAGTGGAAAATATAGTTTCCCATGAGCACGGGAAAGGAGAATCAAGCTTCAAGTGGAAAAAGAGAAGCAGTCAATCCTGGGAAACGGAAAAGCAATCAGTTGATTGCACCTCAGTATTTGTTGAGCCCATGAAATGGATGCAAGCAGTACACGAAGGTCATGTGGAGGATAAACTTCTCTGTATGGGTTGTAATGCTCGTTTGGGTAACTTCAACTGGGCCGGTATGCAGTGCAGCTGTGGAGCCTGGGTTAACCCTGCGTTTCAGCTGCATAAAAGCCGATTAGATGAGTGCAATATGTAA
Predicted protein sequences of Glyma08g46290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g46290.1 sequence type=predicted peptide gene model=Glyma08g46290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEAGSSQTETTTKPPQLIYRCKKCRRIVASVENIVSHEHGKGESSFKWKKRSSQSWETEKQSVDCTSVFVEPMKWMQAVHEGHVEDKLLCMGCNARLGNFNWAGMQCSCGAWVNPAFQLHKSRLDECNM*