Report for Sequence Feature Glyma08g46260
Feature Type: gene_model
Chromosome: Gm08
Start: 45431373
stop: 45439403
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g46260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G07220 AT
Annotation by Michelle Graham. TAIR10: SMAD/FHA domain-containing protein | chr3:2297968-2299407 FORWARD LENGTH=320
SoyBase E_val: 5.00E-156 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PTHR13233 Panther
MICROSPHERULE PROTEIN 1
JGI ISS
PF00498 PFAM
FHA domain
JGI ISS
UniRef100_B9T3B9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcriptional activator, putative n=1 Tax=Ricinus communis RepID=B9T3B9_RICCO
SoyBase E_val: 7.00E-163 ISS
UniRef100_I1KZ40 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ40_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g46260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g46260
Paralog Evidence Comments
Glyma18g33521 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g46260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g348400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g46260
Coding sequences of Glyma08g46260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g46260.1 sequence type=CDS gene model=Glyma08g46260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAACGGCGGCGGCGGGCGGCGACGTGGAGGCAGGGTTCGCGAAGCTCCAGGGTGAGGACTTCGAGTACTACATGCAGACCTACTCCATCGTCCTTGGCCGCAACTCCAAGAAGTCCACGGTCGATGTCGACCTCTCCAGCCTCGGTGGCGGCATGAACATCTCCCGCCACCATGCCCGCATCTTCTACGACTTCGCCCGCCGCCGCTTCGCCCTCGAGGTCCTCGGCAAAAACGGCTGCCTCGTGGAGGGCGTCCTCCACCTCCCCGGCAACCCCCCCGTCAAGCTCGATTCCCAAGATCTCCTCCAGATTGGGGACAAGGAGTTCTACTTTCTCCTGCCCGTTCGCAGCATCCTTGTTGGGCCCGTCGGCCCGAGGCATTACCCTAACCACGCCGCACCCGGGCCCGTCGTGCCGCACTATAATAATTACCATTTGGGCCCCGGCCCGGTGAAGAAGGCGCCGCGACGGGAGTACTACGAGGAAGAGTTTGATGATGAGGATGATGTTGGTGGGAGGAAGATGCGGAGGGATGGGTATGATGGATATGGCTACGCTGGTGGCAAGTCTTCGCTGTCCGCACCTATGGATAAGAAGTCTGAAGGTAGATCCCGAGTAGATCGAGATGCTGATAATCTTCAGCTTCAGCAGCTGGAAGAAAAAGATGTAGTATCATCTGTAGCTACTGTTCTTTCTGATCTCTGTGGTCCTGGAGAGTGGATGCCTATGGAGAAACTTCATACGGAGCTGTTGGAGCAATATAGCAGTGTTTGGCACCACAACAGAGTGAGGAGGTATCTTACATCAGAAGATTGGCCTGGTCCTGAATCCAAAGGGAAGCCTTGGTATGGCTTGCTTATGCTGTTAAGGAAGTACCCTGAGCATTTTGTCATCAACACAAGGTCCAAGGGCCGTGTCACCCTCGAGTTTGTTTCTCTTGTCTCTCTGATATCGTGA
Predicted protein sequences of Glyma08g46260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g46260.1 sequence type=predicted peptide gene model=Glyma08g46260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSTAAAGGDVEAGFAKLQGEDFEYYMQTYSIVLGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFARRRFALEVLGKNGCLVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILVGPVGPRHYPNHAAPGPVVPHYNNYHLGPGPVKKAPRREYYEEEFDDEDDVGGRKMRRDGYDGYGYAGGKSSLSAPMDKKSEGRSRVDRDADNLQLQQLEEKDVVSSVATVLSDLCGPGEWMPMEKLHTELLEQYSSVWHHNRVRRYLTSEDWPGPESKGKPWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLIS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
