Glyma08g46250 - SoyBase

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Report for Sequence Feature Glyma08g46250

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45419136
stop:	45426205
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13040	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr4:7614100-7615310 FORWARD LENGTH=226	SoyBase	E_val: 1.00E-43	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B6U166	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein n=1 Tax=Zea mays RepID=B6U166_MAIZE	SoyBase	E_val: 1.00E-55	ISS
UniRef100_I1KZ38	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ38_SOYBN	SoyBase	E_val: 1.00E-169	ISS

Expression Patterns of Glyma08g46250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g46250

Paralog	Evidence	Comments
Glyma18g33460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g46250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g348300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g46250

Limit To All Plant Sequences

>Glyma08g46250.3   sequence type=transcript   gene model=Glyma08g46250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTGTATGTGTGTGGTCAAATGGGTTTGTCTTCTCTGTCACCACCCCCTTCCAAGAAAGGTGGTAGGTTGATGTGGTTGACTTCCACCCGAGGAGAAAGACTTGGCTTATTTTCGTGATTTTTGTTTCCAAAATTGGATTCCATTTAATGTTGTGGCCCTGTGGGGGAGTTTTCTTGTGAAAACCATGATATTATCAACTTTGTTTTAAATTTTTTTTTTCTTTGAAATGGTTTATCATCTTTCAGCTTTGAAGGGGTTGGTGATACGTTGTTATGATAAAATCGGATTGCTGATTTAAACAATTGTTTATAAGGTACTCTTCCTGCTAAATTGATGGAAAAAGTTGGTATCATAGGAAGTTAATCACTGTGCTTTGATGACTTGGTAAGAAAACTTGAACTGACAATGGTAAGTTTGAGAAGGCGCAGACTTTTGGGACTGTGCTCAGGAAACAGTTCCTTTGTCACACCACTTCCTCTATATTGTGAGAATCTTTCTGGTTTTGAAAATTCAAACCAGCAAGCTAAACCTAAGAGTGAACAGCCTGCGCTTTCTGATGATGCAACCAACCCGGACAGTAATAATGTTGTGCAAGAAGAACCGGGATCATCAAATGCTTCTGGTTCTAGCTCATCGAAAGAGCAGCTTATTCAACAAATTACAGGACCTCCTATTAAACGCAGAAAGCGACATAGAAGAAAGAATTTGCACAATCAAGAACAATGCATAATGAGGGGTGTCTACTTCAAAAATATGAAGTGGCAGGCAGCAATAAAGGTGGACAAGAAACAGATCCATCTAGGGACTCTCGGGTCACAAGAAGAAGCTGCTCACTTATATGATAGGGCTGCTTTCATGTGTGGAAGAGAGCCCAATTTTGAGCTTCCCGAGGAAGAGAAGCGGGATTTGAGCAAATTTAAATGGGACGAATTCTTGGCCATGACTCGCCAAGCAATCACACGCAAAAAACACAAGAGAAGGCTTAGTCCCGGACCAGGTAATAGTCATGATATGCTTCCACTGTCCAAAGATGATTGGGACACTAAGCAAGGAGTGATTGAAGATGCAGAGCAGGAAACATCAGTGTCGTGAAAATTATGATTCTGGAAATAACCCAAGAGTGAAGATGGAAAGCCTCTAGTCCTAACACTTCAACTCTAATATCATGCTAGATCCATTTTTATTGTAGAAAAATGCAGCATTATGTCAGACCTTGATAGAATTGATTATCCTTAATTTATGCAAATTGCTATACCTAAACCCAATAAAGAGTCCATTCAATGTTAGACGTGTCAACTACCAACTGTTGAACTCTATATCAGTTTCATCAAACTAGTGCAACGCCATTTTCTTCTTCCACTTGGTGGGAATATATGAATTTTTCTCAAGCAGTTAATTGAATTGTTTTTTCAACTTACATTGTCCATATTCATAATGTTT

>Glyma08g46250.4   sequence type=transcript   gene model=Glyma08g46250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAATAAAGTACTCAGCAGCTAGTAGTTACGTTCTCATTCTAATTTTTCAACCCTCTCTTTCTCTCTCTACAAAGACTTTCTCTGTCCACAACCATCATACCATTATACCTTACCACCCTTCCCTTCTCTCTTTTATACACACACAGGAAAGAAAGAGGGAGAAAACAAAAACAAAATCAAAAGGTGGTAGATGCATGAGCCACAACACAACACACATTATCTCTTACCACACTCACCACCTTGTATTCCCCAAAATTCACATAATTCTCCTTCTCTTGCCTTTTCCCTCAGATTTCTCACCCCTTCTCTCTTCTGTGTTCCCACCCTTTTCAGGTACTCTTCCTGCTAAATTGATGGAAAAAGTTGGTATCATAGGAAGTTAATCACTGTGCTTTGATGACTTGGTAAGAAAACTTGAACTGACAATGGTAAGTTTGAGAAGGCGCAGACTTTTGGGACTGTGCTCAGGAAACAGTTCCTTTGTCACACCACTTCCTCTATATTGTGAGAATCTTTCTGGTTTTGAAAATTCAAACCAGCAAGCTAAACCTAAGAGTGAACAGCCTGCGCTTTCTGATGATGCAACCAACCCGGACAGTAATAATGTTGTGCAAGAAGAACCGGGATCATCAAATGCTTCTGGTTCTAGCTCATCGAAAGAGCAGCTTATTCAACAAATTACAGGACCTCCTATTAAACGCAGAAAGCGACATAGAAGAAAGAATTTGCACAATCAAGAACAATGCATAATGAGGGGTGTCTACTTCAAAAATATGAAGTGGCAGGCAGCAATAAAGGTGGACAAGAAACAGATCCATCTAGGGACTCTCGGGTCACAAGAAGAAGCTGCTCACTTATATGATAGGGCTGCTTTCATGTGTGGAAGAGAGCCCAATTTTGAGCTTCCCGAGGAAGAGAAGCGGGATTTGAGCAAATTTAAATGGGACGAATTCTTGGCCATGACTCGCCAAGCAATCACACGCAAAAAACACAAGAGAAGGCTTAGTCCCGGACCAGGTAATAGTCATGATATGCTTCCACTGTCCAAAGATGATTGGGACACTAAGCAAGGAGTGATTGAAGATGCAGAGCAGGAAACATCAGTGTCGTGAAAATTATGATTCTGGAAATAACCCAAGAGTGAAGATGGAAAGCCTCTAGTCCTAACACTTCAACTCTAATATCATGCTAGATCCATTTTTATTGTAGAAAAATGCAGCATTATGTCAGACCTTGATAGAATTGATTATCCTTAATTTATGCAAATTGCTATACCTAAACCCAATAAAGAGTCCATTCAATGTTAGACGTGTCAACTACCAACTGTTGAACTCTATATCAGTTTCATCAAACTAGTGCAACGCCATTTTCTTCTTCCACTTGGTGGGAATATATGAATTTTTCTCAAGCAGTTAATTGAATTGTTTTTTCAACTTACATTGTCCATATTCATAATGTTT

Coding sequences of Glyma08g46250

Limit To All Plant Sequences

>Glyma08g46250.2   sequence type=CDS   gene model=Glyma08g46250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGTTTGAGAAGGCGCAGACTTTTGGGACTGTGCTCAGGAAACAGTTCCTTTGTCACACCACTTCCTCTATATTGTGAGAATCTTTCTGGTTTTGAAAATTCAAACCAGCAAGCTAAACCTAAGAGTGAACAGCCTGCGCTTTCTGATGATGCAACCAACCCGGACAGTAATAATGTTGTGCAAGAAGAACCGGGATCATCAAATGCTTCTGGTTCTAGCTCATCGAAAGAGCAGCTTATTCAACAAATTACAGGACCTCCTATTAAACGCAGAAAGCGACATAGAAGAAAGAATTTGCACAATCAAGAACAATGCATAATGAGGGGTGTCTACTTCAAAAATATGAAGTGGCAGGCAGCAATAAAGGTGGACAAGAAACAGATCCATCTAGGGACTCTCGGGTCACAAGAAGAAGCTGCTCACTTATATGATAGGGCTGCTTTCATGTGTGGAAGAGAGCCCAATTTTGAGCTTCCCGAGGAAGAGAAGCGGGATTTGAGCAAATTTAAATGGGACGAATTCTTGGCCATGACTCGCCAAGCAATCACACGCAAAAAACACAAGAGAAGGCTTAGTCCCGGACCAGGTAATAGTCATGATATGCTTCCACTGTCCAAAGATGATTGGGACACTAAGCAAGGAGTGATTGAAGATGCAGAGCAGGAAACATCAGTGTCGTGA

>Glyma08g46250.3   sequence type=CDS   gene model=Glyma08g46250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGTTTGAGAAGGCGCAGACTTTTGGGACTGTGCTCAGGAAACAGTTCCTTTGTCACACCACTTCCTCTATATTGTGAGAATCTTTCTGGTTTTGAAAATTCAAACCAGCAAGCTAAACCTAAGAGTGAACAGCCTGCGCTTTCTGATGATGCAACCAACCCGGACAGTAATAATGTTGTGCAAGAAGAACCGGGATCATCAAATGCTTCTGGTTCTAGCTCATCGAAAGAGCAGCTTATTCAACAAATTACAGGACCTCCTATTAAACGCAGAAAGCGACATAGAAGAAAGAATTTGCACAATCAAGAACAATGCATAATGAGGGGTGTCTACTTCAAAAATATGAAGTGGCAGGCAGCAATAAAGGTGGACAAGAAACAGATCCATCTAGGGACTCTCGGGTCACAAGAAGAAGCTGCTCACTTATATGATAGGGCTGCTTTCATGTGTGGAAGAGAGCCCAATTTTGAGCTTCCCGAGGAAGAGAAGCGGGATTTGAGCAAATTTAAATGGGACGAATTCTTGGCCATGACTCGCCAAGCAATCACACGCAAAAAACACAAGAGAAGGCTTAGTCCCGGACCAGGTAATAGTCATGATATGCTTCCACTGTCCAAAGATGATTGGGACACTAAGCAAGGAGTGATTGAAGATGCAGAGCAGGAAACATCAGTGTCGTGA

>Glyma08g46250.4   sequence type=CDS   gene model=Glyma08g46250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGTTTGAGAAGGCGCAGACTTTTGGGACTGTGCTCAGGAAACAGTTCCTTTGTCACACCACTTCCTCTATATTGTGAGAATCTTTCTGGTTTTGAAAATTCAAACCAGCAAGCTAAACCTAAGAGTGAACAGCCTGCGCTTTCTGATGATGCAACCAACCCGGACAGTAATAATGTTGTGCAAGAAGAACCGGGATCATCAAATGCTTCTGGTTCTAGCTCATCGAAAGAGCAGCTTATTCAACAAATTACAGGACCTCCTATTAAACGCAGAAAGCGACATAGAAGAAAGAATTTGCACAATCAAGAACAATGCATAATGAGGGGTGTCTACTTCAAAAATATGAAGTGGCAGGCAGCAATAAAGGTGGACAAGAAACAGATCCATCTAGGGACTCTCGGGTCACAAGAAGAAGCTGCTCACTTATATGATAGGGCTGCTTTCATGTGTGGAAGAGAGCCCAATTTTGAGCTTCCCGAGGAAGAGAAGCGGGATTTGAGCAAATTTAAATGGGACGAATTCTTGGCCATGACTCGCCAAGCAATCACACGCAAAAAACACAAGAGAAGGCTTAGTCCCGGACCAGGTAATAGTCATGATATGCTTCCACTGTCCAAAGATGATTGGGACACTAAGCAAGGAGTGATTGAAGATGCAGAGCAGGAAACATCAGTGTCGTGA

Predicted protein sequences of Glyma08g46250

Limit To All Plant Sequences

>Glyma08g46250.2   sequence type=predicted peptide   gene model=Glyma08g46250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLRRRRLLGLCSGNSSFVTPLPLYCENLSGFENSNQQAKPKSEQPALSDDATNPDSNNVVQEEPGSSNASGSSSSKEQLIQQITGPPIKRRKRHRRKNLHNQEQCIMRGVYFKNMKWQAAIKVDKKQIHLGTLGSQEEAAHLYDRAAFMCGREPNFELPEEEKRDLSKFKWDEFLAMTRQAITRKKHKRRLSPGPGNSHDMLPLSKDDWDTKQGVIEDAEQETSVS*

>Glyma08g46250.3   sequence type=predicted peptide   gene model=Glyma08g46250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLRRRRLLGLCSGNSSFVTPLPLYCENLSGFENSNQQAKPKSEQPALSDDATNPDSNNVVQEEPGSSNASGSSSSKEQLIQQITGPPIKRRKRHRRKNLHNQEQCIMRGVYFKNMKWQAAIKVDKKQIHLGTLGSQEEAAHLYDRAAFMCGREPNFELPEEEKRDLSKFKWDEFLAMTRQAITRKKHKRRLSPGPGNSHDMLPLSKDDWDTKQGVIEDAEQETSVS*

>Glyma08g46250.4   sequence type=predicted peptide   gene model=Glyma08g46250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLRRRRLLGLCSGNSSFVTPLPLYCENLSGFENSNQQAKPKSEQPALSDDATNPDSNNVVQEEPGSSNASGSSSSKEQLIQQITGPPIKRRKRHRRKNLHNQEQCIMRGVYFKNMKWQAAIKVDKKQIHLGTLGSQEEAAHLYDRAAFMCGREPNFELPEEEKRDLSKFKWDEFLAMTRQAITRKKHKRRLSPGPGNSHDMLPLSKDDWDTKQGVIEDAEQETSVS*

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