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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25140 | AT | Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein | chr3:9154748-9156642 FORWARD LENGTH=559 | SoyBase | E_val: 0 | ISS |
| GO:0010289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: homogalacturonan biosynthetic process | SoyBase | N/A | ISS |
| GO:0016051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process | SoyBase | N/A | ISS |
| GO:0045489 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pectin biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0047262 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity | SoyBase | N/A | ISS |
| PTHR13778 | Panther | GLYCOSYL TRANSFERASE-RELATED | JGI | ISS | |
| PTHR13778:SF3 | Panther | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 1 | JGI | ISS | |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | ISS | |
| UniRef100_B9T3B4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase QUASIMODO1, putative n=1 Tax=Ricinus communis RepID=B9T3B4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KZ34 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ34_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g46210 not represented in the dataset |
Glyma08g46210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g33210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g348000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g46210.2 sequence type=transcript gene model=Glyma08g46210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAATTTAAGCTAGACACAACTATAAGATGTCAAATCTGTGCCTTCCTTTCTGTCGTCTCTCTTTGCGAAGAAGAGAGTGAAAGAGAATATCTGAGACTCTGATTCTGAGAGTCGAGACGAGTGAGTGAGTGCTGCTTCTTCTTCTGAATCAAATCATTCATCACTCTCTGGTTCTGATTTTTCTGACACCAAAATGGTGAATCCTCGAATTCCACGTTCAAGGATCCCAACTTTCACACTTTTCACTTCTGCTATCTCCATCGTTCTGTGCATTTTCTTCGTTCTCTCTTTTCTCTTCACTGCCCATTCTTATTCCTCCCATCAACACCACAACGCGGGTTCTGACGGTGGTGTTGCACATGGATTTGAGTCGATTAGGAGATCCGTCCTAGCTCTGAAAACAGATCCTCTCAAGCCTCGGTTGGACCAGATTCGTAAACTAACCGATGATCATCGCTCTTTGGCTCTCGTGTATTCTTCCTATGCACGCAAGCTCAAGCTTGAGAGCTCAAAGCTTGTTAGGATTTTCGCAGAGCTATCACGCAACTTCTCGGATCTAATGAACAAGCCGCAGTACAGGACTCTTTTCAGCAATGATGCATCCCCTGTTGATGAATCAGCGCTTCGCCAATTGGAGAAGGAAGTGAAGGAGCGCATTAAGACCACCCGCCAGGTGATTGGTGATGCCAAGGAGTCCTTTGATAACCAGCTCAAGATTCAAAAGTTGAAGGATACAATCTTCGCTGTGAATGAGCAGTTAACCAAGGCGAAGAAGCAGGGTGCTTTCTCCAGCCTCATAGCTGCCAAGTCGATTCCAAAGAGCTTGCATTGTCTCTCAATGAGGTTGATGGAAGAGAGGATTGCCCATCCTGAGAAGTATTCAACTGAGGGGAAGCCGGTTCCTCCAGAAGTTGAAGATCCTAACCTGTACCACTATGCCTTGTTCTCTGATAATGTTGTTGCCGCATCTGTTGTGGTCAATTCAGCAACAAAGAATGCAAAGGAGCCGTGGAAGCATGTGTTTCATGTTGTGACCGATAAGATGAACCTTGGAGCAATGCAAGTGATGTTTAAGTTGAAAAATTATCATGGTGCACACATTGAGGTTAAGGCTGTGGAGGATTACAAGTTCCTGAATTCATCTTATGTGCCAGTCCTAAAACAATTGGAGTCTGCTAACCTTCAGAGATTTTACTTCGAGAACAAGCTTGAAAATGCTACAAAGGACACAAATAATATGAAGTTCAGGAACCCCAAATATTTGTCAATATTGAACCATTTGAGGTTCTACTTGCCAGAAATGTATCCAAAGCTGCATAAAATTTTGTTTTTGGATGATGACATAGTGGTTCAGAAGGACCTAACTGGGCTATGGAAGATTGATATGGATGGCAAGGTGAATGGAGCTGTAGAAACATGTTTTGGGTCATTCCATAGATATGCACAGTACATGAATTTCTCGCACCCCTTGATTAAAGCAAAGTTTAATCCAAAGGCTTGTGCATGGGCTTATGGAATGAATTTCTTTGATTTGGATGCTTGGAGAAGGGAAAAATGCACAGAAGAATATCATTACTGGCAGAATCTGGTAAGACCTTAATCTTTATTCTCTTATTATTTCACCGCAACTTTTTAGCCCTTCATTATTATACAACCCAAGGTTTTAGCTGTTATTAATCCTATTTAATATTGTTTTATACCTGTTGATGTTATTAAAATCCATGTGATGCTGATCATTGCATCACTAGCATTGATGGTAGAGGCTGCATATTTAGAAACTAGAATAGAAACAATGTAGCTCATATATGTTATGGTCTCATTCATCAATTCATTTCATATCCAATCATTTGTAACCAGTCATGTTGAGACTATATCATATCATGT
>Glyma08g46210.1 sequence type=CDS gene model=Glyma08g46210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAATCCTCGAATTCCACGTTCAAGGATCCCAACTTTCACACTTTTCACTTCTGCTATCTCCATCGTTCTGTGCATTTTCTTCGTTCTCTCTTTTCTCTTCACTGCCCATTCTTATTCCTCCCATCAACACCACAACGCGGGTTCTGACGGTGGTGTTGCACATGGATTTGAGTCGATTAGGAGATCCGTCCTAGCTCTGAAAACAGATCCTCTCAAGCCTCGGTTGGACCAGATTCGTAAACTAACCGATGATCATCGCTCTTTGGCTCTCGTGTATTCTTCCTATGCACGCAAGCTCAAGCTTGAGAGCTCAAAGCTTGTTAGGATTTTCGCAGAGCTATCACGCAACTTCTCGGATCTAATGAACAAGCCGCAGTACAGGACTCTTTTCAGCAATGATGCATCCCCTGTTGATGAATCAGCGCTTCGCCAATTGGAGAAGGAAGTGAAGGAGCGCATTAAGACCACCCGCCAGGTGATTGGTGATGCCAAGGAGTCCTTTGATAACCAGCTCAAGATTCAAAAGTTGAAGGATACAATCTTCGCTGTGAATGAGCAGTTAACCAAGGCGAAGAAGCAGGGTGCTTTCTCCAGCCTCATAGCTGCCAAGTCGATTCCAAAGAGCTTGCATTGTCTCTCAATGAGGTTGATGGAAGAGAGGATTGCCCATCCTGAGAAGTATTCAACTGAGGGGAAGCCGGTTCCTCCAGAAGTTGAAGATCCTAACCTGTACCACTATGCCTTGTTCTCTGATAATGTTGTTGCCGCATCTGTTGTGGTCAATTCAGCAACAAAGAATGCAAAGGAGCCGTGGAAGCATGTGTTTCATGTTGTGACCGATAAGATGAACCTTGGAGCAATGCAAGTGATGTTTAAGTTGAAAAATTATCATGGTGCACACATTGAGGTTAAGGCTGTGGAGGATTACAAGTTCCTGAATTCATCTTATGTGCCAGTCCTAAAACAATTGGAGTCTGCTAACCTTCAGAGATTTTACTTCGAGAACAAGCTTGAAAATGCTACAAAGGACACAAATAATATGAAGTTCAGGAACCCCAAATATTTGTCAATATTGAACCATTTGAGGTTCTACTTGCCAGAAATGTATCCAAAGCTGCATAAAATTTTGTTTTTGGATGATGACATAGTGGTTCAGAAGGACCTAACTGGGCTATGGAAGATTGATATGGATGGCAAGGTGAATGGAGCTGTAGAAACATGTTTTGGGTCATTCCATAGATATGCACAGTACATGAATTTCTCGCACCCCTTGATTAAAGCAAAGTTTAATCCAAAGGCTTGTGCATGGGCTTATGGAATGAATTTCTTTGATTTGGATGCTTGGAGAAGGGAAAAATGCACAGAAGAATATCATTACTGGCAGAATCTGAATGAGAACCGGACATTATGGAAATTAGGGACATTGCCACCAGGTCTAATCACATACTACGCAACAACAAAGCCACTGGACAAGTCATGGCATGTTCTGGGACTTGGCTATAACCCAAGCATCAGCATGGATGAGATTAACAATGCAGCAGTTGTGCACTTCAATGGCAATATGAAACCATGGCTCGACATTGCAATGACTCAGTTCAAGCCACTTTGGACAAAGTATGTTGACTATGAATTAGATTTCGTTCAGGCCTGCAATTTTGGTATCTAA >Glyma08g46210.2 sequence type=CDS gene model=Glyma08g46210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAATCCTCGAATTCCACGTTCAAGGATCCCAACTTTCACACTTTTCACTTCTGCTATCTCCATCGTTCTGTGCATTTTCTTCGTTCTCTCTTTTCTCTTCACTGCCCATTCTTATTCCTCCCATCAACACCACAACGCGGGTTCTGACGGTGGTGTTGCACATGGATTTGAGTCGATTAGGAGATCCGTCCTAGCTCTGAAAACAGATCCTCTCAAGCCTCGGTTGGACCAGATTCGTAAACTAACCGATGATCATCGCTCTTTGGCTCTCGTGTATTCTTCCTATGCACGCAAGCTCAAGCTTGAGAGCTCAAAGCTTGTTAGGATTTTCGCAGAGCTATCACGCAACTTCTCGGATCTAATGAACAAGCCGCAGTACAGGACTCTTTTCAGCAATGATGCATCCCCTGTTGATGAATCAGCGCTTCGCCAATTGGAGAAGGAAGTGAAGGAGCGCATTAAGACCACCCGCCAGGTGATTGGTGATGCCAAGGAGTCCTTTGATAACCAGCTCAAGATTCAAAAGTTGAAGGATACAATCTTCGCTGTGAATGAGCAGTTAACCAAGGCGAAGAAGCAGGGTGCTTTCTCCAGCCTCATAGCTGCCAAGTCGATTCCAAAGAGCTTGCATTGTCTCTCAATGAGGTTGATGGAAGAGAGGATTGCCCATCCTGAGAAGTATTCAACTGAGGGGAAGCCGGTTCCTCCAGAAGTTGAAGATCCTAACCTGTACCACTATGCCTTGTTCTCTGATAATGTTGTTGCCGCATCTGTTGTGGTCAATTCAGCAACAAAGAATGCAAAGGAGCCGTGGAAGCATGTGTTTCATGTTGTGACCGATAAGATGAACCTTGGAGCAATGCAAGTGATGTTTAAGTTGAAAAATTATCATGGTGCACACATTGAGGTTAAGGCTGTGGAGGATTACAAGTTCCTGAATTCATCTTATGTGCCAGTCCTAAAACAATTGGAGTCTGCTAACCTTCAGAGATTTTACTTCGAGAACAAGCTTGAAAATGCTACAAAGGACACAAATAATATGAAGTTCAGGAACCCCAAATATTTGTCAATATTGAACCATTTGAGGTTCTACTTGCCAGAAATGTATCCAAAGCTGCATAAAATTTTGTTTTTGGATGATGACATAGTGGTTCAGAAGGACCTAACTGGGCTATGGAAGATTGATATGGATGGCAAGGTGAATGGAGCTGTAGAAACATGTTTTGGGTCATTCCATAGATATGCACAGTACATGAATTTCTCGCACCCCTTGATTAAAGCAAAGTTTAATCCAAAGGCTTGTGCATGGGCTTATGGAATGAATTTCTTTGATTTGGATGCTTGGAGAAGGGAAAAATGCACAGAAGAATATCATTACTGGCAGAATCTGGTAAGACCTTAA
>Glyma08g46210.1 sequence type=predicted peptide gene model=Glyma08g46210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNPRIPRSRIPTFTLFTSAISIVLCIFFVLSFLFTAHSYSSHQHHNAGSDGGVAHGFESIRRSVLALKTDPLKPRLDQIRKLTDDHRSLALVYSSYARKLKLESSKLVRIFAELSRNFSDLMNKPQYRTLFSNDASPVDESALRQLEKEVKERIKTTRQVIGDAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLSMRLMEERIAHPEKYSTEGKPVPPEVEDPNLYHYALFSDNVVAASVVVNSATKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKNYHGAHIEVKAVEDYKFLNSSYVPVLKQLESANLQRFYFENKLENATKDTNNMKFRNPKYLSILNHLRFYLPEMYPKLHKILFLDDDIVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYATTKPLDKSWHVLGLGYNPSISMDEINNAAVVHFNGNMKPWLDIAMTQFKPLWTKYVDYELDFVQACNFGI* >Glyma08g46210.2 sequence type=predicted peptide gene model=Glyma08g46210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNPRIPRSRIPTFTLFTSAISIVLCIFFVLSFLFTAHSYSSHQHHNAGSDGGVAHGFESIRRSVLALKTDPLKPRLDQIRKLTDDHRSLALVYSSYARKLKLESSKLVRIFAELSRNFSDLMNKPQYRTLFSNDASPVDESALRQLEKEVKERIKTTRQVIGDAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLSMRLMEERIAHPEKYSTEGKPVPPEVEDPNLYHYALFSDNVVAASVVVNSATKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKNYHGAHIEVKAVEDYKFLNSSYVPVLKQLESANLQRFYFENKLENATKDTNNMKFRNPKYLSILNHLRFYLPEMYPKLHKILFLDDDIVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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