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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48630 | AT | Annotation by Michelle Graham. TAIR10: Cyclin family protein | chr5:19721663-19723200 REVERSE LENGTH=253 | SoyBase | E_val: 2.00E-145 | ISS |
| GO:0000079 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016591 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, holoenzyme | SoyBase | N/A | ISS |
| GO:0004693 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0019901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase binding | SoyBase | N/A | ISS |
| KOG0794 | KOG | CDK8 kinase-activating protein cyclin C | JGI | ISS | |
| PTHR10026 | Panther | CYCLIN | JGI | ISS | |
| PTHR10026:SF7 | Panther | CYCLIN H | JGI | ISS | |
| PF00134 | PFAM | Cyclin, N-terminal domain | JGI | ISS | |
| UniRef100_G7L053 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-C1-2 n=1 Tax=Medicago truncatula RepID=G7L053_MEDTR | SoyBase | E_val: 1.00E-166 | ISS |
| UniRef100_I1KZ28 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ28_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g46170 not represented in the dataset |
Glyma08g46170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g33140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g347600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g46170.4 sequence type=transcript gene model=Glyma08g46170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATAATTTTAAAGCAAGTGGAAAAATCGGGACCATTAGATTAATCTAATGGTCCAAAATTAGGGAAAGTCACTGAATCCGTTACCGTGAATGTCCTGCTCCTTCCCCTTTGTGCGCACACTTCAAATTCACCGCCACTTCTGCCGCCCTCCATAAGCTCCATCGCGCCTCTTTTCCTCTCCGTCTCCGACCTCCGATCCTCCCTCGCCGAGACATCCTCCGACGGTGGCAGAATCGTAATTTTCCGCGGCACCGTCGACACACCTCGAAAACCTTGAGACCCGGTGTCTTGGTTTCTCGCAAGTCCAGCGATAACAGCGTCGTTCTTCAAAGAACTCAAACGTGTTTGTCCACTGTTTTCTGCTTCCTATTTGGCAGAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTACAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGGTATTACACTGGAGGATTTTAAGCTTATTAAGATGCACATGGCTAATTATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAGGAAGAGTATGGCTGAATATGATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATACAGTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAGAAAGACACCACTGCTTGGTTTGAAGAACTTCGTGTTGATATGAATGTGGTTAAAAACATATCAATGGAGATACTTGATTTTTATGAAAGCAATAGAATGTTCACTGATGAGAGAATCAATGCTGCTCTTCAGAAGCTGAGCCTGAGACCCTAGAACTTACTGTAGATGACTCAACGCTGAATATGTGGAATGAAGTTAATGCTATGGTGATTTGTCTGAATGATTTTTCTGGGTCAATGACATGTTTTACGGTAGAACACTATCTAAATGTATCCAAAAGTAAGGGCACGTAATATTGGGGGTCAATTCAAAGTGTCCTATTAAAGAGCAAAAGGAGGATGAAAAAAGGTGATTCTCGGTGAGGACCAGATAGACTCCCACCTGATTCATAGAATCTTTTGTTTTTATCTATTTATTGTCATAAATCAAAGTGTCTACAATTTTTTTAAAACTTTTTACCATTATTTAGTGTGATGAACAATTTATAATTGTTTTATCGGTCTTAATTCCTCTGTAAGGGATCGATTTACGCTACTTAACGTGGCGTTATTAGATATTTTCACATTTTGTTTATCTTGCAAGCATATACTATTCTTTTACTCCTATATGATAGTTTATGGTGTGGTGAATAATACTTTTACTATCTAAGCATACTTTCTTATA >Glyma08g46170.5 sequence type=transcript gene model=Glyma08g46170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATAATTTTAAAGCAAGTGGAAAAATCGGGACCATTAGATTAATCTAATGGTCCAAAATTAGGGAAAGTCACTGAATCCGTTACCGTGAATGTCCTGCTCCTTCCCCTTTGTGCGCACACTTCAAATTCACCGCCACTTCTGCCGCCCTCCATAAGCTCCATCGCGCCTCTTTTCCTCTCCGTCTCCGACCTCCGATCCTCCCTCGCCGAGACATCCTCCGACGGTGGCAGAATCGTAATTTTCCGCGGCACCGTCGACACACCTCGAAAACCTTGAGACCCGGTGTCTTGGTTTCTCGCAAGTCCAGCGATAACAGCGTCGTTCTTCAAAGAACTCAAACGAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTACAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGGTATTACACTGGAGGATTTTAAGCTTATTAAGATGCACATGGCTAATTATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAGGAAGAGTATGGCTGAATATGATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATACAGTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAGAAAGACACCACTGCTTGGTTTGAAGAACTTCGTGTTGATATGAATGTGGTTAAAAACATATCAATGGAGATACTTGATTTTTATGAAAGCAATAGAATGTTCACTGATGAGAGAATCAATGCTGCTCTTCAGAAGCTGAGCCTGAGACCCTAGAACTTACTGTAGATGACTCAACGCTGAATATGTGGAATGAAGTTAATGCTATGGTGATTTGTCTGAATGATTTTTCTGGGTCAATGACATGTTTTACGGTAGAACACTATCTAAATGTATCCAAAAGTAAGGGCACGTAATATTGGGGGTCAATTCAAAGTGTCCTATTAAAGAGCAAAAGGAGGATGAAAAAAGGTGATTCTCGGTGAGGACCAGATAGACTCCCACCTGATTCATAGAATCTTTTGTTTTTATCTATTTATTGTCATAAATCAAAGTGTCTACAATTTTTTTAAAACTTTTTACCATTATTTAGTGTGATGAACAATTTATAATTGTTTTATCGGTCTTAATTCCTCTGTAAGGGATCGATTTACGCTACTTAACGTGGCGTTATTAGATATTTTCACATTTTGTTTATCTTGCAAGCATATACTATTCTTTTACTCCTATATGATAGTTTATGGTGTGGTGAATAATACTTTTACTATCTAAGCATACTTTCTTATA
>Glyma08g46170.2 sequence type=CDS gene model=Glyma08g46170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCAATTTCTGGACATCATCTCATTACAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAGGAAGAGTATGGCTGAATATGATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATACAGTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAGAAAGACACCACTGCTTGGTTTGAAGAACTTCGTGTTGATATGAATGTGGTTAAAAACATATCAATGGAGATACTTGATTTTTATGAAAGCAATAGAATGTTCACTGATGAGAGAATCAATGCTGCTCTTCAGAAGCTGAGCCTGAGACCCTAG >Glyma08g46170.4 sequence type=CDS gene model=Glyma08g46170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCAATTTCTGGACATCATCTCATTACAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGGTATTACACTGGAGGATTTTAAGCTTATTAAGATGCACATGGCTAATTATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAGGAAGAGTATGGCTGAATATGATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATACAGTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAGAAAGACACCACTGCTTGGTTTGAAGAACTTCGTGTTGATATGAATGTGGTTAAAAACATATCAATGGAGATACTTGATTTTTATGAAAGCAATAGAATGTTCACTGATGAGAGAATCAATGCTGCTCTTCAGAAGCTGAGCCTGAGACCCTAG >Glyma08g46170.5 sequence type=CDS gene model=Glyma08g46170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCAATTTCTGGACATCATCTCATTACAAGCATCTTCTGGATCAGGAAGATGTGGATGTGGTGAATACACTCGACAAGGAAAAGGGTATTACACTGGAGGATTTTAAGCTTATTAAGATGCACATGGCTAATTATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAGGAAGAGTATGGCTGAATATGATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATACAGTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAGAAAGACACCACTGCTTGGTTTGAAGAACTTCGTGTTGATATGAATGTGGTTAAAAACATATCAATGGAGATACTTGATTTTTATGAAAGCAATAGAATGTTCACTGATGAGAGAATCAATGCTGCTCTTCAGAAGCTGAGCCTGAGACCCTAG
>Glyma08g46170.2 sequence type=predicted peptide gene model=Glyma08g46170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAANFWTSSHYKHLLDQEDVDVVNTLDKEKDILKLAQQVKVRQRVVATAVTYMRRVYTRKSMAEYDPRLVAPTCLYLASKAEESTVQARLLVFYIKKLYSDDKYRYEIKDILEMEMKILEALNYYLVVYHPYRSLSPLLQDAGLNDLNMTQLTWGLVNDTYKMDLILVHPPHLIALACIYIASVLREKDTTAWFEELRVDMNVVKNISMEILDFYESNRMFTDERINAALQKLSLRP* >Glyma08g46170.4 sequence type=predicted peptide gene model=Glyma08g46170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAANFWTSSHYKHLLDQEDVDVVNTLDKEKGITLEDFKLIKMHMANYILKLAQQVKVRQRVVATAVTYMRRVYTRKSMAEYDPRLVAPTCLYLASKAEESTVQARLLVFYIKKLYSDDKYRYEIKDILEMEMKILEALNYYLVVYHPYRSLSPLLQDAGLNDLNMTQLTWGLVNDTYKMDLILVHPPHLIALACIYIASVLREKDTTAWFEELRVDMNVVKNISMEILDFYESNRMFTDERINAALQKLSLRP* >Glyma08g46170.5 sequence type=predicted peptide gene model=Glyma08g46170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAANFWTSSHYKHLLDQEDVDVVNTLDKEKGITLEDFKLIKMHMANYILKLAQQVKVRQRVVATAVTYMRRVYTRKSMAEYDPRLVAPTCLYLASKAEESTVQARLLVFYIKKLYSDDKYRYEIKDILEMEMKILEALNYYLVVYHPYRSLSPLLQDAGLNDLNMTQLTWGLVNDTYKMDLILVHPPHLIALACIYIASVLREKDTTAWFEELRVDMNVVKNISMEILDFYESNRMFTDERINAALQKLSLRP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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