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Report for Sequence Feature Glyma08g46160

Feature Type:gene_model
Chromosome:Gm08
Start:45332280
stop:45337111
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g46160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07270AT Annotation by Michelle Graham. TAIR10: GTP cyclohydrolase I | chr3:2315451-2317059 FORWARD LENGTH=466 SoyBaseE_val: 0ISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0046654GO-bp Annotation by Michelle Graham. GO Biological Process: tetrahydrofolate biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003934GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP cyclohydrolase I activity SoyBaseN/AISS
KOG2698 KOG GTP cyclohydrolase I JGI ISS
PTHR11109Panther GTP CYCLOHYDROLASE I JGI ISS
PF01227PFAM GTP cyclohydrolase I JGI ISS
UniRef100_G7L058UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP cyclohydrolase I n=1 Tax=Medicago truncatula RepID=G7L058_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KZ27UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ27_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g46160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g46160
ParalogEvidenceComments
Glyma18g33025 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g46160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g347400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g46160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g46160
>Glyma08g46160.1   sequence type=CDS   gene model=Glyma08g46160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTGTTTGGGTGATGGGCGTTTCGCTGTTGAGATTCGAAATGGAGTGAGCAATGGTTGTGGTGAAGTTGAGGATGCTGTGAAGGTTTTGTTGGAGGGTCTAGGGGAAGATGTGAACAGGGAAGGTCTTAGAAAGACACCACTTCGTGTTGCCAAGGCCCTTCGTGAAGGAACCAGAGGTTACAGACAAAAGGTGAAGGACATTGTTCAAGGTGCTTTATTCCCCGAAGCTGGTCTAGATAATAGAGTTGGTCATGCAGGGGGAGCAGGTGGACTCGTGATTGTTCGAGATCTTGACTTGTTTTCCTATTGTGAGTCCTGCTTGCTTCCATTCCCGGTCAAGTGTCATGTGGGTTATGTCCCCTCTGGTGAAAGAGTTGTTGGTTTAAGCAAGCTCTCTCGTGTTGCTGATGTATTTGCGAAACGACTTCAAGAGCCTCAGCGTCTGGCAGATGAGGTATGCTCTGCTTTACATCGGGGAATAAAGCCGGCAGGTGTTGCTATCATACTTCAATGTACACATATCCACTTTCCAGACATAGAACCAGTCTTTCTTGACTCAAACCATCAAGGGTGGGTGAAGATACTTGTTTCCTCAGGTTCTGGGGTTTTTGAGAACAAAAATGCAGATGTATGGGATGATTTCTTTGGTCTTCTTAAATTTAGAGGCATCAATATGGATAAAATTCATTTGAGAGGATCATCTGATCCATGCTGGTGTCCTTCTCAGTCTTCTCTATCTGCCAAAGTTTCCTCGAAAATAGGACCAGTCAATCCTGTAATGGTTACTGCAGTAGCTTCAATTATTGAATCTTTGGGAGAAGATCCTTTGAGGAAAGAGCTTATAGGGACTCCAAGTAGGTTTGTGAAATGGTTGATGAACTTTCAAAACAGTAACTTTGATATGAAGTTGAATGGTTTTCTTTGTGATGGGATAGATTCTTTGAATGCCAATGAGGAGGTTAACGTCAACCAAAAAATAACCTCTGAGCTGAACATACCTTTTTGGTCACAATGTGAGCATCATTTGCTTCCCTTTCATGGTGTTGTTCACATAGGATACCTCATGTCTGATGGATTCAATCCTATGGGAAAATTGCTTTTACAATCAATAGTACATTTTTATGGTTTCAAGCTCCAAGTTCAGGAAAGGCTTACCAGGCAGATAGCTGAAACCATTGCCCCACTGTTAGGCGGAGATGTGATAGTAGTTGTAGAGGCAAGCCACACATGTATGATTTCGAGGGGAATTGAGAAGTTTGGAAGTAGTACGGCTACTATTGCAGTGTTAGGACATTTTTCAACCAACCCTACTGCAAGGGCATCATTCTTGGAGAGTATTCCACGTCCTACATCATCTGGGGAGCAATGA
Predicted protein sequences of Glyma08g46160
>Glyma08g46160.1   sequence type=predicted peptide   gene model=Glyma08g46160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCLGDGRFAVEIRNGVSNGCGEVEDAVKVLLEGLGEDVNREGLRKTPLRVAKALREGTRGYRQKVKDIVQGALFPEAGLDNRVGHAGGAGGLVIVRDLDLFSYCESCLLPFPVKCHVGYVPSGERVVGLSKLSRVADVFAKRLQEPQRLADEVCSALHRGIKPAGVAIILQCTHIHFPDIEPVFLDSNHQGWVKILVSSGSGVFENKNADVWDDFFGLLKFRGINMDKIHLRGSSDPCWCPSQSSLSAKVSSKIGPVNPVMVTAVASIIESLGEDPLRKELIGTPSRFVKWLMNFQNSNFDMKLNGFLCDGIDSLNANEEVNVNQKITSELNIPFWSQCEHHLLPFHGVVHIGYLMSDGFNPMGKLLLQSIVHFYGFKLQVQERLTRQIAETIAPLLGGDVIVVVEASHTCMISRGIEKFGSSTATIAVLGHFSTNPTARASFLESIPRPTSSGEQ*






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