Glyma08g46145 - SoyBase

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Report for Sequence Feature Glyma08g46145

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45326391
stop:	45327260
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46145

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46550	AT	Annotation by Michelle Graham. TAIR10: DNA-binding bromodomain-containing protein \| chr5:18884439-18886503 REVERSE LENGTH=494	SoyBase	E_val: 3.00E-14	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF00439	PFAM	Bromodomain	JGI		ISS
UniRef100_G7JTJ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Global transcription factor group n=1 Tax=Medicago truncatula RepID=G7JTJ5_MEDTR	SoyBase	E_val: 4.00E-24	ISS
UniRef100_I1N2C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N2C4_SOYBN	SoyBase	E_val: 2.00E-59	ISS

Expression Patterns of Glyma08g46145

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g46145 not represented in the dataset	Glyma08g46145 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g46145 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g347200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46145

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g46145

Limit To All Plant Sequences

>Glyma08g46145.1   sequence type=CDS   gene model=Glyma08g46145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAACAGAACATCCTCGGAGAAAACTCATTATAAAGATTTACTTTCCACGTTCCCAAAAGCATGAGGCCGCCTCTGAGGTTTCTGATTCTTGTTGCGGTGAGAAGAGGAGTACCGTCACTTCTTCGAACCCACCATCTCACGGTACCAACACTCCAAACGATTCAAGAAGCGCGTCGAAAGTGTGTGAGCTGAAGAATAAGAAGGGTTATTATGCGACTGCAACATGGGTTAACATTGAAAACCCATCATCGGAATCTTCTGCCATTGATTCAAGAATTTCAAGAACCGGGTCTGAAGTGTGTGAGTTGAAGAACAAGAAGGAGGGTGTGCGTGTAGGGTGCAAGAACACAGATAAGAAGCGAAAGGTCGTTTACTCTCCACGTTCTGAAAATCCTGAAGCACCCTCTGATGAGAAAAGGAGAAAAACGAGTTCTTCAAACCCATTATCAGAAGATTCAAGAACTGTGCGTGTAGAGTGCAAAAAGAAGCGAATATTGATGGACCGTTGCAAGAAGATGCAGTGTTGGGCTATGTTGAAGCGTTTAATGGTGGGAAGAGATGCGTGGGCTTTAAAAAAGGATATTCTTGATCCCAAGGTATTGTGCGTTCTTCATAAGTCTGAAGCCATAAGAAAGCCAAAGGGTTTGGAGGATATTGAGTCAAAGTTGAAGAATTGGGATTACTCCGAAACTGATGAGTTTGTGGATGATGTGAAGCTTGTGTTGTCTTATGCTTTGCAATATCCTCAAAGGAGTGAGGTTCATAGAACTGCAAGGAGGATCAGTGAGGGTTTTGAGATCAGTTGGAAAACTATGAAGGCCAAGTGGATGCGTGACGAACAAGATTTGCAAGAGAAGAGATGA

Predicted protein sequences of Glyma08g46145

Limit To All Plant Sequences

>Glyma08g46145.1   sequence type=predicted peptide   gene model=Glyma08g46145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTEHPRRKLIIKIYFPRSQKHEAASEVSDSCCGEKRSTVTSSNPPSHGTNTPNDSRSASKVCELKNKKGYYATATWVNIENPSSESSAIDSRISRTGSEVCELKNKKEGVRVGCKNTDKKRKVVYSPRSENPEAPSDEKRRKTSSSNPLSEDSRTVRVECKKKRILMDRCKKMQCWAMLKRLMVGRDAWALKKDILDPKVLCVLHKSEAIRKPKGLEDIESKLKNWDYSETDEFVDDVKLVLSYALQYPQRSEVHRTARRISEGFEISWKTMKAKWMRDEQDLQEKR*

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