Glyma08g46130 - SoyBase

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Report for Sequence Feature Glyma08g46130

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45316625
stop:	45322382
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13080	AT	Annotation by Michelle Graham. TAIR10: multidrug resistance-associated protein 3 \| chr3:4196019-4201250 REVERSE LENGTH=1514	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0010290	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll catabolite transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015431	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione S-conjugate-exporting ATPase activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0054	KOG	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily	JGI		ISS
PTHR24223	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24223:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF00664	PFAM	ABC transporter transmembrane region	JGI		ISS
UniRef100_G7K4H3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance protein ABC transporter family n=1 Tax=Medicago truncatula RepID=G7K4H3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KZ24	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KZ24_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g46130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g46130

Paralog	Evidence	Comments
Glyma18g32860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g46130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g347000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g46130

Limit To All Plant Sequences

>Glyma08g46130.1   sequence type=CDS   gene model=Glyma08g46130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTATGTTTTCCTTCATGCGTTATCCGCCTCTATCCACCTTCTCTTCCTCGCGGCGTCGTCTCTGTCATGGCTTTGGAACAAAGTCACTCTCACACCAACAACCAGGGAAGAACACTCTAAGGAGGAGAAACACAATAGCAATAACAATAACACCATTTTCAAAACAACCGTGTTTTGTTCTCTCGCTCTTTCTGTCTTCAGTTTCGTCCTCTGTTTGTTCAATTACTTCTACTGGTACACGAGTGGCTGGTCAGAGCAAAATGTGTCGACCCTTTTGGATTTGGCGCTTAAAACACTTGCTTGGGGCGTTGTTTCTGTTTCCCTGCTCAAAGGGTTCTCTTTCGTCCTCTTCTTCAGTGAAGAAGAAAAAAGATTCAGGTTCTCATTCTTCTTCCGAGCTTGGTGCACCTTCTACCTCGTTTTTTCTTGCTATTCCTTCGTTGTTGACATTGTTGTTCTCTCCAAGAGACCAATTCAGTACTTGGTTTCCGATGCTGTATCCACTTGTGCCGGGTTGTTCTTCTGTTTCGTGGCGTATTTTGTGAAAAACAAGGGTCATGTCAACGGTATTGAGGAACCTCTTTTGAATGGTGATGCAAATGTTGGTAATGAAAAAGAGGCCACGGGTGGGGACACTGTTACCCCTTTTTCACATGCTGGAGTTTTCAGCATTCTCACTTTCTCTTGGGTGGGTCCTCTTGTGGCTGTTGGCAACAAGAAAACCTTGGACCTTGATGATGTTCCTCAACTGGATACCAGAGATAGTGTAGTTGGTGCTTTTCCAAGTTTCAGGGATAAACTTGAAGCTGATTCTGATGCAAATGCAATTAATAGTATCACCACACTTAAGCTTGTGAAGAATTTGGTAAAATCTTTTCTTGCATTGTTAAACACCTTGGCTTCTTTTATTGGTCCTTATCTTATTGATGCTTTTGTTCAGTACCTTGATGGACGGCGTCAGTATGAAAACCAGGGCTATGTGCTGGTTTTTGTGTTTTTCTTTGCGAAGATTGTAGAGTGCCTCTCCCAAAGGCATTGGTTCTTTAGGTTGCAGCAAATTGGAATTCGAATGCGAGCGCTGCTTGTCACCATGATCTATAACAAGGCTCTCACCCTTTCTTGTCAGTCAAAGCAGGGCCACACTTCCGGGGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGCAACTTCAGTTGGTACATGCATGATTTGTGGATGGTGGCACTGCAAGTTGTGTTGGCCTTGCTGATTTTGTATAAGAACCTTGGCCTTGCTTCAATTGCTGCTCTTGTTGCAACCTTTGTTGTTATGTTGGCAAATGTTCCCTTGGGATCATTGCAGGAGAAGTTTCAAAATAAGTTGATGGAGTCAAAAGATACAAGAATGAAGGCCACATCCGAGATTTTGAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCGAAAATAACCGAGCTCAGGAAAACTGAGCAAGGCTGGTTAACGAAATATGTTTATACCACAGCCATGACCACGTTTGTGTTCTGGGGTGCCCCCACATTTATATCTGTGGTTACCATTGGTGCTTGTATGCTGATAGGGGTCCCCCTTGAATCTGGAAAGATCTTGTCTGCACTTGCAACGTTTCGGATTCTTCAAGAGCCCATTTATAATCTTCCTGATACAATTTCAATGATAGCACAGACTAAAGTTTCTCTTGATAGGATTTCATCATTCCTTCGTCTTGATGACTTGCGGTCTGATGTTGTAGAGAAGCTTCCTCGGGGCAGTTCTGATACAGCAATTGAAGTAATTGATGGAAACTTTTCTTGGGATTTATCTTCCCCTAACCCAACATTGCAAAATATAAATCTCAAAGTTTTTCATGGGATGAGGGTTGCTGTTTGTGGAACTGTTGGATCGGGAAAGTCTACTTTGCTTTCTTGTGTATTGGGAGAAGTACCTAAGATATCAGGCATTCTTAAGGTTTGCGGAACAAAGGCCTATGTTGCTCAGTCTCCATGGGTACAAAGTGGTAAGATAGAGGATAACATATTGTTTGGTGAACACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGCTCCCTAAAGAAGGATCTGGAGATTTTTTCATTTGGGGATCAGACAGTTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAAAAACAAAGAATACAAATTGCACGAGCTCTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCACACAGGTTCTCACCTCTTTAAGGAATGCCTGCTGGGCCTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGACCTTATATTGGTGATCATGAAAGATGGTAAAATTTCTCAATGTGGGAAGTATGCCGATCTTCTTAATAGTGGGACTGATTTTATGGAACTTGTTGGTGCACACAAAGAAGCTTTGTCAACACTGGATTCATTGGATGGACTGGCAACATCTAATGAAATAAGTACCTTGGAACAAGATTTAAATGTGTCTAGTACGCATGGTTTTAAGGAAAAAGAGGCAAGCAAAGATGAACCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGTTTTGGGTCTATTGGAACTATATCACAACAGCATATGGAGGAGCTCTGGTACCTTTCATATTGTTGGCTCAGATTCTTTTTGAAGCTCTTCAAATTGGAAGCAATTATTGGATGGCTTGGGCGACACCCATCTCAACAGATGTGGAGCCACCTGTTGGAGGATCGACTCTTATAGTAATCTATGTTGGTCTGGCCGTTGGAAGTTCTTTCTGTGTCCTTGTCAGATCAATGCTTCTTGTCACAGTTGGTTACAAGACAACTACCGTGCTATTCAATAAGATGCACTTATGCATTTTCCGTGCTCCAATGTCATTTTTCGATTCCACTCCAAGTGGGCGAGTCCTGAACAGAGCTTCAACTGACCAAAGTACAGTGGATACTGACATTCCTTATCAAATTGGCTCATTTGCCTTCTCTATGATCCAGCTTCTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTCATTGTCTTTATACCTGTGATAGCAGTCAGAATCTGGTATCAGCAATATTATATACCTTCAGCTCGAGAACTATCACGTTTAGTTGGAGTCTGCAAAGCCCCAATCATTCAACACTTTGCTGAAACAATTTCTGGTACTTCAACCATTAGAAGCTTTGATCATCAGTCAAGATTTCAGGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATTGTTGGTGCCATGGAATGGCTGTGCTTCCGCTTAGATATGTTGTCTTCTATCACATTTGCCTTTTCCTTAATATTCTTAATTTCTATTCCACCGGGAATCATAGATCCAGGAATTGCTGGTTTAGCAGTTACATATGGACTTAATTTGAACATGATACAAGCTTGGATGATATGGAATCTCTGCAATTTGGAGAACAAAATTATATCAGTAGAAAGAATACTTCAATATACTATTATTCCTAACGGGCCTCCCCTTGTTGTAGAAGACAATCGGCCAGATCCTTCTTGGCCCTCGTATGGTGAGGTTGACATACAAGATTTGCAGGTTTGCTATGATCCACATCTTCCACTGGTGTTGCGTGGTCTTACATGCAAATTTTATGGAGGAATGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCCACTCTCATTCAAACACTTTTCCGAATTGTTGAGCCTACTTCCGGACAAATTATGATTGACAACTTTAACATCTCTTCAATTGGGCTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACAGTGAGAAATAATCTGGACCCCCTGGAAGAGTACACTGATGAACAAATTTGGGAGGCACTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGACGGAAAGCTTGACTCCACAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTGTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGATTTTGGTCCTTGATGAAGCCACCGCATCAGTTGACACAGCTACGGATAATTTGATTCAGCAAACTCTTAGGCAACATTTTTCTGCCTCTACCGTCATTACCATTGCACATCGAATAACTTCGGTTATTGACAGTGATATGGTTCTGCTTCTTAATCAAGGACTTATTGAGGAGTATGACACCCCAACAACTTTGCTAGAGAATAAGTCTTCTTTTGCTCAACTTGTTGCAGAGTATACCATGAGGTCCAAATCCAGTTTTGAGAAATCTGTTGATCACTGA

Predicted protein sequences of Glyma08g46130

Limit To All Plant Sequences

>Glyma08g46130.1   sequence type=predicted peptide   gene model=Glyma08g46130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYVFLHALSASIHLLFLAASSLSWLWNKVTLTPTTREEHSKEEKHNSNNNNTIFKTTVFCSLALSVFSFVLCLFNYFYWYTSGWSEQNVSTLLDLALKTLAWGVVSVSLLKGFSFVLFFSEEEKRFRFSFFFRAWCTFYLVFSCYSFVVDIVVLSKRPIQYLVSDAVSTCAGLFFCFVAYFVKNKGHVNGIEEPLLNGDANVGNEKEATGGDTVTPFSHAGVFSILTFSWVGPLVAVGNKKTLDLDDVPQLDTRDSVVGAFPSFRDKLEADSDANAINSITTLKLVKNLVKSFLALLNTLASFIGPYLIDAFVQYLDGRRQYENQGYVLVFVFFFAKIVECLSQRHWFFRLQQIGIRMRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGNFSWYMHDLWMVALQVVLALLILYKNLGLASIAALVATFVVMLANVPLGSLQEKFQNKLMESKDTRMKATSEILRNMRILKLQGWEMKFLSKITELRKTEQGWLTKYVYTTAMTTFVFWGAPTFISVVTIGACMLIGVPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRISSFLRLDDLRSDVVEKLPRGSSDTAIEVIDGNFSWDLSSPNPTLQNINLKVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWVQSGKIEDNILFGEHMDRERYEKVLEACSLKKDLEIFSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVIMKDGKISQCGKYADLLNSGTDFMELVGAHKEALSTLDSLDGLATSNEISTLEQDLNVSSTHGFKEKEASKDEPKGQLVQEEEREKGKVGFWVYWNYITTAYGGALVPFILLAQILFEALQIGSNYWMAWATPISTDVEPPVGGSTLIVIYVGLAVGSSFCVLVRSMLLVTVGYKTTTVLFNKMHLCIFRAPMSFFDSTPSGRVLNRASTDQSTVDTDIPYQIGSFAFSMIQLLGIIAVMSQVAWQVFIVFIPVIAVRIWYQQYYIPSARELSRLVGVCKAPIIQHFAETISGTSTIRSFDHQSRFQETNMKLTDGYSRPKFNIVGAMEWLCFRLDMLSSITFAFSLIFLISIPPGIIDPGIAGLAVTYGLNLNMIQAWMIWNLCNLENKIISVERILQYTIIPNGPPLVVEDNRPDPSWPSYGEVDIQDLQVCYDPHLPLVLRGLTCKFYGGMKTGIVGRTGSGKSTLIQTLFRIVEPTSGQIMIDNFNISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKDGKLDSTVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFSASTVITIAHRITSVIDSDMVLLLNQGLIEEYDTPTTLLENKSSFAQLVAEYTMRSKSSFEKSVDH*

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