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Report for Sequence Feature Glyma08g46010

Feature Type:gene_model
Chromosome:Gm08
Start:45241261
stop:45242118
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g46010
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25240AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF506) | chr3:9192540-9193385 FORWARD LENGTH=281 SoyBaseE_val: 1.00E-66ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04720PFAM Protein of unknown function (DUF506) JGI ISS
UniRef100_Q9LSF2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF02145.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LSF2_ARATH SoyBaseE_val: 6.00E-64ISS
UniRef100_UPI0002339249UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339249 related cluster n=1 Tax=unknown RepID=UPI0002339249 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g46010
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g46010 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g346100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g46010
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g46010
>Glyma08g46010.1   sequence type=CDS   gene model=Glyma08g46010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCTTTTACAAGAATGAAGCGAGTCACTGACCCGTTCGACCACCAGGCCCGAGCTCGACTCGTCGGTACTGATCACCGGCAAATCACCTCCGCCGCCCAAGGTGACTCTGACTCCCTTTCCCTCTCTTGTCTCATCCACGGTTTCCTCGAACAAGACACCACCAACGACGACTCTGACTCAGTAATTCATGACTCGGACTGGGACCCAGTCGACTCAGTGGACGACTCCCCCGACTCGCCGAGCAACTCGCCGAGTCTCTCTTTCTTACACTCCAACAATGCGGACCCTTACAGAAACTTACTTATCGCGCACGTTTCGGAGGCGTTGGAGAGCCTCGCGTTTCTTCGGGAGCGAAACGCGTCGCTCTTCCGGCGGAGCGTGGCGGCGTTCCTCCGGGAGAGAAGGCACGACGCCGCGGTGTGCGAGACCGCGCGGGACTCCTCCGGCGGAAGCCACGAGTTCATCGACGTGGTCCAGACCGGATCCGCCACATGCAGGTATTTCGTGGACCTCGACTTCCGCGCGCAGTTCGAGATCGCGCGCCCGACGCGGCGGTTCTCGGAGGCGCTGGCCGCCGTTCCCGGCGTGTTCGTCGGGGGCGCGGAGGAGCTGAAACGCACCGTTTCGACGGCGTGCGACGCCGCGAGGAGGTGTTTCAGGAGCAGAGGGCTTCCGGTTCCGCCGTGGAGGAAGAACCGGTTCATGCAGAACAAGTGGTTCGGGCCGTGTCGCCGAACCGCGAGGGATACTTCCATGGGATTTAACGGTGGTGTTAGTTGCAGGGTGGTGGGGTTCGACGACGTCGTTTCGGAAGCGGGACGTGGCGGTGGCGTTGTTGTTCGTACGAGATGA
Predicted protein sequences of Glyma08g46010
>Glyma08g46010.1   sequence type=predicted peptide   gene model=Glyma08g46010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAFTRMKRVTDPFDHQARARLVGTDHRQITSAAQGDSDSLSLSCLIHGFLEQDTTNDDSDSVIHDSDWDPVDSVDDSPDSPSNSPSLSFLHSNNADPYRNLLIAHVSEALESLAFLRERNASLFRRSVAAFLRERRHDAAVCETARDSSGGSHEFIDVVQTGSATCRYFVDLDFRAQFEIARPTRRFSEALAAVPGVFVGGAEELKRTVSTACDAARRCFRSRGLPVPPWRKNRFMQNKWFGPCRRTARDTSMGFNGGVSCRVVGFDDVVSEAGRGGGVVVRTR*






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