Glyma08g46000 - SoyBase

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Report for Sequence Feature Glyma08g46000

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45230635
stop:	45234114
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g46000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49100	AT	Annotation by Michelle Graham. TAIR10: Signal recognition particle, SRP9/SRP14 subunit \| chr3:18196944-18198298 FORWARD LENGTH=103	SoyBase	E_val: 6.00E-64	ISS
GO:0006614	GO-bp	Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane	SoyBase	N/A	ISS
GO:0045900	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of translational elongation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0048500	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle	SoyBase	N/A	ISS
GO:0005047	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal recognition particle binding	SoyBase	N/A	ISS
GO:0008312	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 7S RNA binding	SoyBase	N/A	ISS
KOG3465	KOG	Signal recognition particle, subunit Srp9	JGI		ISS
PTHR12834	Panther	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	JGI		ISS
PTHR12834:SF1	Panther	SIGNAL RECOGNITION PARTICLE 9 KD PROTEIN	JGI		ISS
PF05486	PFAM	Signal recognition particle 9 kDa protein (SRP9)	JGI		ISS
UniRef100_I1KZ11	UniRef	Annotation by Michelle Graham. Best UniRef hit: Signal recognition particle 9 kDa protein n=1 Tax=Glycine max RepID=I1KZ11_SOYBN	SoyBase	E_val: 8.00E-71	ISS
UniRef100_I1KZ11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle 9 kDa protein n=1 Tax=Glycine max RepID=I1KZ11_SOYBN	SoyBase	E_val: 8.00E-71	ISS

Expression Patterns of Glyma08g46000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g46000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g346000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g46000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g46000

Limit To All Plant Sequences

>Glyma08g46000.4   sequence type=transcript   gene model=Glyma08g46000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAAACTAGTTTTCCATTTTAACAGATCTAAGCCAAGTTTACACTGTTTGAAAAAAGACCCTTTGGATTGAATTGAAGAACACGCAAATTGCTCCTACGGAAGGGTTTTTACTTAGCGCGCTCTTTTGTTTCTCTTGGAGATATAGGTATGCACTGAATCGATTCTCCTTGTTCTGCCCTGGATCAACATTAACTGAAACAGAAAACGTGTTTTTTCCTGTCATGGATCATTTGACTTCGATTGATTTTTAAATGGGTATTGCTATGTCGTTGTTGAATGAATGGGGTTGTTGCTAGAAGCAGTCTTCCATGTGGGTTTTGATTGTCCTGTACTGAAAGACTTCATAACATACTGTGTGTGTGAGGGACTCGGTGCTGCTTTAATTACTGCTCTTGTGAAGGTGAACTGTGAACTTGGTTGGTCAGAGCTTGCCAACAGGCAGAAAGTTGCTGAAGTCCCTCAATTGTGCTTCCCTGCCTCCTTTCCCAAAGTCTCTGTCTGGTGCAATGGTTTATATAACTGAGTGGGACAAGTTTGTGGAGCAATCCATTGAGCTGTTCCGTGCAGATCCTGATTCTACAAGGTATGTCATGAAGTACAGGCACTGTGATGGCAAGTTGGTACTCAAGGTCACTGATAACCGACAGTGTCTAAAGTATAAGACAGACCAAGCACAAGAGGCTAAGAAGATGGAGAAACTGAATAATATGTTCTTTGCTTTGATGGCTCGTGGTCCTGATGTTGATCTATCAGAAGTCACGGGAAAAGAGCAAATGGATGCTCAGCCAACCAAGAAAGGAAGAGGAAGGAAGCAATAACTTACTTGGCCTTTTGCTAGACAAGATGGTTTTATGAATCACTGGACTAAGAATTTGAATAGTTATATTTTTTTCCCTACCTAATGATTACTTCAGATTCTTATGATGTGAGAGGTTTATATTTTGAAGTTTTGAAGTCTCAATTTCTGATCTTTACCTATTAACATTTTTCTCAGTTTTCAAATAGCTTTGATTACTTAAAGTACATTTTATTAACTTATATATATTGAAGCCTGAGTTTTGCTAGGTATACTTAAATATTTATTCATT

Coding sequences of Glyma08g46000

Limit To All Plant Sequences

>Glyma08g46000.3   sequence type=CDS   gene model=Glyma08g46000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTATATAACTGAGTGGGACAAGTTTGTGGAGCAATCCATTGAGCTGTTCCGTGCAGATCCTGATTCTACAAGGTATGTCATGAAGTACAGGCACTGTGATGGCAAGTTGGTACTCAAGGTCACTGATAACCGACAGTGTCTAAAGTATAAGACAGACCAAGCACAAGAGGCTAAGAAGATGGAGAAACTGAATAATATGTTCTTTGCTTTGATGGCTCGTGGTCCTGATGTTGATCTATCAGAAGTCACGGGAAAAGAGCAAATGGATGCTCAGCCAACCAAGAAAGGAAGAGGAAGGAAGCAATAA

>Glyma08g46000.4   sequence type=CDS   gene model=Glyma08g46000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTATATAACTGAGTGGGACAAGTTTGTGGAGCAATCCATTGAGCTGTTCCGTGCAGATCCTGATTCTACAAGGTATGTCATGAAGTACAGGCACTGTGATGGCAAGTTGGTACTCAAGGTCACTGATAACCGACAGTGTCTAAAGTATAAGACAGACCAAGCACAAGAGGCTAAGAAGATGGAGAAACTGAATAATATGTTCTTTGCTTTGATGGCTCGTGGTCCTGATGTTGATCTATCAGAAGTCACGGGAAAAGAGCAAATGGATGCTCAGCCAACCAAGAAAGGAAGAGGAAGGAAGCAATAA

Predicted protein sequences of Glyma08g46000

Limit To All Plant Sequences

>Glyma08g46000.3   sequence type=predicted peptide   gene model=Glyma08g46000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYITEWDKFVEQSIELFRADPDSTRYVMKYRHCDGKLVLKVTDNRQCLKYKTDQAQEAKKMEKLNNMFFALMARGPDVDLSEVTGKEQMDAQPTKKGRGRKQ*

>Glyma08g46000.4   sequence type=predicted peptide   gene model=Glyma08g46000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYITEWDKFVEQSIELFRADPDSTRYVMKYRHCDGKLVLKVTDNRQCLKYKTDQAQEAKKMEKLNNMFFALMARGPDVDLSEVTGKEQMDAQPTKKGRGRKQ*

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