Report for Sequence Feature Glyma08g46000
Feature Type: gene_model
Chromosome: Gm08
Start: 45230635
stop: 45234114
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g46000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G49100 AT
Annotation by Michelle Graham. TAIR10: Signal recognition particle, SRP9/SRP14 subunit | chr3:18196944-18198298 FORWARD LENGTH=103
SoyBase E_val: 6.00E-64 ISS
GO:0006614 GO-bp
Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane
SoyBase N/A ISS
GO:0045900 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of translational elongation
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0048500 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle
SoyBase N/A ISS
GO:0005047 GO-mf
Annotation by Michelle Graham. GO Molecular Function: signal recognition particle binding
SoyBase N/A ISS
GO:0008312 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 7S RNA binding
SoyBase N/A ISS
KOG3465
KOG
Signal recognition particle, subunit Srp9
JGI ISS
PTHR12834 Panther
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
JGI ISS
PTHR12834:SF1 Panther
SIGNAL RECOGNITION PARTICLE 9 KD PROTEIN
JGI ISS
PF05486 PFAM
Signal recognition particle 9 kDa protein (SRP9)
JGI ISS
UniRef100_I1KZ11 UniRef
Annotation by Michelle Graham. Best UniRef hit: Signal recognition particle 9 kDa protein n=1 Tax=Glycine max RepID=I1KZ11_SOYBN
SoyBase E_val: 8.00E-71 ISS
UniRef100_I1KZ11 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle 9 kDa protein n=1 Tax=Glycine max RepID=I1KZ11_SOYBN
SoyBase E_val: 8.00E-71 ISS
Expression Patterns of Glyma08g46000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma08g46000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g346000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g46000
Transcripts of Glyma08g46000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g46000.4 sequence type=transcript gene model=Glyma08g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAGAAACTAGTTTTCCATTTTAACAGATCTAAGCCAAGTTTACACTGTTTGAAAAAAGACCCTTTGGATTGAATTGAAGAACACGCAAATTGCTCCTACGGAAGGGTTTTTACTTAGCGCGCTCTTTTGTTTCTCTTGGAGATATAGGTATGCACTGAATCGATTCTCCTTGTTCTGCCCTGGATCAACATTAACTGAAACAGAAAACGTGTTTTTTCCTGTCATGGATCATTTGACTTCGATTGATTTTTAAATGGGTATTGCTATGTCGTTGTTGAATGAATGGGGTTGTTGCTAGAAGCAGTCTTCCATGTGGGTTTTGATTGTCCTGTACTGAAAGACTTCATAACATACTGTGTGTGTGAGGGACTCGGTGCTGCTTTAATTACTGCTCTTGTGAAGGTGAACTGTGAACTTGGTTGGTCAGAGCTTGCCAACAGGCAGAAAGTTGCTGAAGTCCCTCAATTGTGCTTCCCTGCCTCCTTTCCCAAAGTCTCTGTCTGGTGCAATGGTTTATATAACTGAGTGGGACAAGTTTGTGGAGCAATCCATTGAGCTGTTCCGTGCAGATCCTGATTCTACAAGGTATGTCATGAAGTACAGGCACTGTGATGGCAAGTTGGTACTCAAGGTCACTGATAACCGACAGTGTCTAAAGTATAAGACAGACCAAGCACAAGAGGCTAAGAAGATGGAGAAACTGAATAATATGTTCTTTGCTTTGATGGCTCGTGGTCCTGATGTTGATCTATCAGAAGTCACGGGAAAAGAGCAAATGGATGCTCAGCCAACCAAGAAAGGAAGAGGAAGGAAGCAATAACTTACTTGGCCTTTTGCTAGACAAGATGGTTTTATGAATCACTGGACTAAGAATTTGAATAGTTATATTTTTTTCCCTACCTAATGATTACTTCAGATTCTTATGATGTGAGAGGTTTATATTTTGAAGTTTTGAAGTCTCAATTTCTGATCTTTACCTATTAACATTTTTCTCAGTTTTCAAATAGCTTTGATTACTTAAAGTACATTTTATTAACTTATATATATTGAAGCCTGAGTTTTGCTAGGTATACTTAAATATTTATTCATT
Coding sequences of Glyma08g46000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g46000.3 sequence type=CDS gene model=Glyma08g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTTATATAACTGAGTGGGACAAGTTTGTGGAGCAATCCATTGAGCTGTTCCGTGCAGATCCTGATTCTACAAGGTATGTCATGAAGTACAGGCACTGTGATGGCAAGTTGGTACTCAAGGTCACTGATAACCGACAGTGTCTAAAGTATAAGACAGACCAAGCACAAGAGGCTAAGAAGATGGAGAAACTGAATAATATGTTCTTTGCTTTGATGGCTCGTGGTCCTGATGTTGATCTATCAGAAGTCACGGGAAAAGAGCAAATGGATGCTCAGCCAACCAAGAAAGGAAGAGGAAGGAAGCAATAA
>Glyma08g46000.4 sequence type=CDS gene model=Glyma08g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTTATATAACTGAGTGGGACAAGTTTGTGGAGCAATCCATTGAGCTGTTCCGTGCAGATCCTGATTCTACAAGGTATGTCATGAAGTACAGGCACTGTGATGGCAAGTTGGTACTCAAGGTCACTGATAACCGACAGTGTCTAAAGTATAAGACAGACCAAGCACAAGAGGCTAAGAAGATGGAGAAACTGAATAATATGTTCTTTGCTTTGATGGCTCGTGGTCCTGATGTTGATCTATCAGAAGTCACGGGAAAAGAGCAAATGGATGCTCAGCCAACCAAGAAAGGAAGAGGAAGGAAGCAATAA
Predicted protein sequences of Glyma08g46000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g46000.3 sequence type=predicted peptide gene model=Glyma08g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVYITEWDKFVEQSIELFRADPDSTRYVMKYRHCDGKLVLKVTDNRQCLKYKTDQAQEAKKMEKLNNMFFALMARGPDVDLSEVTGKEQMDAQPTKKGRGRKQ*
>Glyma08g46000.4 sequence type=predicted peptide gene model=Glyma08g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVYITEWDKFVEQSIELFRADPDSTRYVMKYRHCDGKLVLKVTDNRQCLKYKTDQAQEAKKMEKLNNMFFALMARGPDVDLSEVTGKEQMDAQPTKKGRGRKQ*