Glyma08g45980 - SoyBase

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Report for Sequence Feature Glyma08g45980

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45208427
stop:	45212001
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07360	AT	Annotation by Michelle Graham. TAIR10: plant U-box 9 \| chr3:2354884-2356613 FORWARD LENGTH=460	SoyBase	E_val: 0	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0071215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0070696	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein serine/threonine kinase binding	SoyBase	N/A	ISS
PTHR22849	Panther	WDSAM1 PROTEIN	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
PF05804	PFAM	Kinesin-associated protein (KAP)	JGI		ISS
UniRef100_B9T5I0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spotted leaf protein, putative n=1 Tax=Ricinus communis RepID=B9T5I0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KZ08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ08_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g345800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45980

Limit To All Plant Sequences

>Glyma08g45980.1   sequence type=CDS   gene model=Glyma08g45980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAGCCAGGGGTGTTGGAGTCTGATCCAGGGGTGATGGTGAAGAAGGCCAAAGAGTTGAAGAGGGAGCTTCAGAGGTTGGTGAAGTCTATTGTGCATGATGAGGATTGCAGCACTGAGACCATTGATCAGGCCAAAGAGACTCTCTGTGTTCTCAAGGAGTTGAAGCTCAGAAACAGGTCTTCACTGTCTCTGAAGCTTCACAACAAGAGTGTCGCTTCTTCTTGCCCTGATGAATTCAAGTGCCCTCTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGACAGACCTTTCATTCAAAAATGGCTAAATGCTGGAAATAGGACTTGCCCTCGTACACATCAAGTCCTTTCACACACTGTGCTTACACCAAATCATCTAATAAGGGAAATGATTGAGCAATGGTCTAAAAACCAGGGGATTGAATTGTCGAATACTGTTCAATATATTGATGAGGAAGGTTTAAACGAAGCCGACCGTGAGCATTTTCTTTGTTTGCTTAAGAAAATGTCATCAACACTTTCTGATCAGAAGACGGCTGCAAAAGAACTGCGCTTGCTGACAAAAAAGTATCCTTGTTTCCGGGTACTCTTCTGTGATTCTGCAGATGCCATTCCCCAATTGCTTAAGCCAATTTGTGGCAGTGATTCTTTTGGTAGTGTTCACCCTGATCTCCAAGAAGATGTAATCACAACACTCCTCAACATCTCTATTCATGATAACAACAAAAAGCTAGTGGCTGAAACTCCTATGGTAATTCCTCTCCTTATGAGAGCATTGAGATCCGGAACAATTGAAACGAGGAGCAATGCCGCAGCTGCGCTTTTCACTTTATCAGCTCTCGACTCAAACAAGGAACTCATAGGGAAATCTGGAGTTTTGAAGCCGTTAATTGACCTCTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTTAACATATGTGTAATGCATGAGAACAAGGCAAGAGCCGAGAAGGACGGCGCAGTGAGGGTGATTTTGGCAAAGATAAATAAGCAGATTCATGTTGCTGAGTTACTAGCTATTCTTGCACTGCTTTCAAGTCACCAGAGGGCTGTTCATGACATGGGAGATCTTGGAGCTGTTCCTAGCTTGCTGAGGATCATCAGAGAGAGCTCATGCGAACGCAACAAGGAGAATTGTGTAGCAATCCTTCAAACCATTTGTCTGTATGATAGATCAAAGTTGAAGGAAATAAGGGAAGAGGAGAACAGCCACAAAACAATCTCTGAGCTAGCAAAGCATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGATTGAATAGGGCTGTTAATATCACACACACTGCATAA

Predicted protein sequences of Glyma08g45980

Limit To All Plant Sequences

>Glyma08g45980.1   sequence type=predicted peptide   gene model=Glyma08g45980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPGVLESDPGVMVKKAKELKRELQRLVKSIVHDEDCSTETIDQAKETLCVLKELKLRNRSSLSLKLHNKSVASSCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLNAGNRTCPRTHQVLSHTVLTPNHLIREMIEQWSKNQGIELSNTVQYIDEEGLNEADREHFLCLLKKMSSTLSDQKTAAKELRLLTKKYPCFRVLFCDSADAIPQLLKPICGSDSFGSVHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGVLKPLIDLLEEGHPLAMKDVASAIFNICVMHENKARAEKDGAVRVILAKINKQIHVAELLAILALLSSHQRAVHDMGDLGAVPSLLRIIRESSCERNKENCVAILQTICLYDRSKLKEIREEENSHKTISELAKHGTSRAKRKASGILERLNRAVNITHTA*

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