SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25250 | AT | Annotation by Michelle Graham. TAIR10: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr3:9195566-9196949 FORWARD LENGTH=421 | SoyBase | E_val: 2.00E-136 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0019901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase binding | SoyBase | N/A | ISS |
| KOG0610 | KOG | Putative serine/threonine protein kinase | JGI | ISS | |
| PTHR24351 | Panther | RIBOSOMAL PROTEIN S6 KINASE | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7LEF2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase OXI1 n=1 Tax=Medicago truncatula RepID=G7LEF2_MEDTR | SoyBase | E_val: 3.00E-155 | ISS |
| UniRef100_I1KZ05 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KZ05_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g45950 not represented in the dataset |
Glyma08g45950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g345500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g45950.1 sequence type=CDS gene model=Glyma08g45950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACGGCGGCGACAGCGACAACAGCGACGGCGGCAGCGATGACCTGCGCCGCGGCGACACGCTGGACTTCCGGAACCTGAAGGTGGTTTCCGCCGTGGGGCGCGGCGCGAAGGGAGTGGTGTTTCTGGCGCGGCAGTACGGCGCAGCGGCGGGTGGCGGGGAGTGGGTGGCGCTGAAGGTGGTGTCGAAGGCGCTTCTTAGAAAAAAGAACAAAAACGGCTATGGCGGGTGCAAGAGGGTGTCGTTCGAGAGGCACATACTGCGTCATTTGGATCACCCCCTTTTTCCGCGGTTCCGTGGGGCCTTCGAGACGGAGCAGCTCACGGGGTTCGCCATTGATTATTGCCACGGTGGGAATCTGCATTCTCTCAGGAAGAAGCAACCGGAGAAAACGTTCTCTGAAAAAAGCATAAGGTTTTACGCAGTGGAATTGGTTCTAGCATTGGAGTATTTGCACAACTTTGGAGTAGTGTATAGGGATTTAAAGCCAGAGAACATCATGATCCAAGAAACAGGTCACATAATGCTTGTGGATTTTGATCTCTCGAAGAAGCTAAAGCTAAAGTCAAACTCATCAAGTTGCAACTCGTCACCGAATTCTGACTCGTCATCAGAGAAGGAGAAGAGAAAGCGACAAATATCGCGGTTCAATTGTTTTTGTCACACAGGAATGTCCTTGTACGACTTGGATATTCCAAGTCAACTCGATACGATCCCGACACGTCAAAGCTTATCAGATTTGTTGGAGAAGTCAAACTCATTTGTGGGAACCGAGGATTACGTGGCACCCGAGGTTATTTTAGGTCAAGGACATGACTTTGGAGTTGATTGGTGGTCATTGGGAATTGTTTTGTATGAGATGCTTTATGGGGCGACGCCGTTTAAGGGCGCTAATAGGAAAGAAACGTTTCAACGAATTATAACCAAAGAGCCATATTTGATGGGCGAAACGACGCCATTGAAGGACTTGATCATCAAGTTGCTTGAGAAAGATCCTAATGGTAGGATTGAGGTTGATGAGATCAAGAGTCATGATTTCTTTAAAGGCGTCAAGTGGGACACGGTGTTGGAAATTGCACGTCCACCATATATTCCTCAGAATGATCATGAAATCGAGGATTTGATAGGATTTTCGAAAAAAGACGTGGAATCTTTTGTTCATGGGATATTTTTCCCCAAGAATAAAAGGGAGAAAGATAAAACAAATGAAGGAGATAAAAAGGGGAATACAATTGAAAGTCGAAAAGACGAGGATAATAATCACAATAATAAGAATGTGTGGGTTGATAAGTTGAATCAAGATTCCATTAAGGATGACAATTTTTTAGTTTTTTAA
>Glyma08g45950.1 sequence type=predicted peptide gene model=Glyma08g45950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYGGDSDNSDGGSDDLRRGDTLDFRNLKVVSAVGRGAKGVVFLARQYGAAAGGGEWVALKVVSKALLRKKNKNGYGGCKRVSFERHILRHLDHPLFPRFRGAFETEQLTGFAIDYCHGGNLHSLRKKQPEKTFSEKSIRFYAVELVLALEYLHNFGVVYRDLKPENIMIQETGHIMLVDFDLSKKLKLKSNSSSCNSSPNSDSSSEKEKRKRQISRFNCFCHTGMSLYDLDIPSQLDTIPTRQSLSDLLEKSNSFVGTEDYVAPEVILGQGHDFGVDWWSLGIVLYEMLYGATPFKGANRKETFQRIITKEPYLMGETTPLKDLIIKLLEKDPNGRIEVDEIKSHDFFKGVKWDTVLEIARPPYIPQNDHEIEDLIGFSKKDVESFVHGIFFPKNKREKDKTNEGDKKGNTIESRKDEDNNHNNKNVWVDKLNQDSIKDDNFLVF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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