Glyma08g45940 - SoyBase

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Report for Sequence Feature Glyma08g45940

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45183945
stop:	45186585
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25290	AT	Annotation by Michelle Graham. TAIR10: Auxin-responsive family protein \| chr3:9208955-9210353 FORWARD LENGTH=393	SoyBase	E_val: 9.00E-151	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG4293	KOG	Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains	JGI		ISS
PTHR23130	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR23130:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03188	PFAM	Eukaryotic cytochrome b561	JGI		ISS
PF04526	PFAM	Protein of unknown function (DUF568)	JGI		ISS
UniRef100_G7KY03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced in root cultures protein n=1 Tax=Medicago truncatula RepID=G7KY03_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KZ04	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ04_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g345400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45940

Limit To All Plant Sequences

>Glyma08g45940.1   sequence type=CDS   gene model=Glyma08g45940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGTCGTCACCACCACCTTCTCTGTTCTTCCTCCTCCTCCTCGCTCTCTTCGCCGCCACGGCATCCTGCCTCACCTGCACCACCCAAAAGCTCACCGACTCCAACAAAAAGCTCTTCTCCAACTGCCTGGACCTTCCCTCACTCGATTCCTTCCTCCACTGGACCCACGACCCCGCCAACGCCTCCCTCTCGGTGGCCTTCGTGGCGGCTCCGCCCAATCCCGGCGGCTGGGTGTCCTGGGGGATCAACCCCAGCGGCACCGGCATGGTGGGGGCGCAGGTGCTGGCCGCGTACAAGGCGGAGGGCACCGGTGCCGTCACCGTGAAAACGTTGGACCTTAAATCTTACTCTGCCATTGTTCCGGGGAAGCTGTCGTTGGACGTGTGGGACATGAGGGGGGAAGAGGTCAGGGGTGTGATTAGGATTTTCGCGACGGTTAAGGTTCCGGATAAGGCGGAGAGTGTTAACCAGGTGTGGCAGGTGGGGCCCTCGGTTACCGCGGGGAGGATTGACAGGCATGACTTTGCTCCCCCCAATATAAATGCCAAGGGCGTCCTTAGCTTCAACGGGTCGCAGAGTGGTGGTGGTGGTGGTGGTGCCGTCGACCCCGTTACCATGAAGAAAAATATTCATGGAATTCTAAATACTGTGAGTTGGGGAGTTCTGTTTCCACTTGGAGTGATCATAGCAAGGTACATGAGAACTTTTCCTTCTGCAGATCCAGCGTGGTTCTATCTTCATGTTGGTTGCCAGGTATCGTCTTACGCCATTGGGGTTGCTGGCTGGGGAACTGGCATGAAACTTGGAAGCCAATCAGAGGGGATTCAATACAGTGCTCATCGCTATATTGGAATCTTCCTCTTTTCGTTTGCAACTCTACAGATTTTCGCATTGTTCCTGAGGCCAGTGAAGGATCACAAGTATAGGTACATCTGGAACATCTATCACCACAGCATTGGATACAGCATAATTATCCTGGGAATCATCAACATCTTCAGGGGGTTTAGCATCTTGCATCCTGATCAGAAATGGAAATCAACTTACACTGCAGTGCTCATTGCACTTGGTGCAGTTGCCTTGTTCTTGGAAGTGATCACATGGATTGTTGTGTTGAAGAGAAAGTCTGGCAAGTCCACCAAAACCTATGATGGACACAACAATGGACAATCTAGGGAAGACCCCCTAACCATATAA

Predicted protein sequences of Glyma08g45940

Limit To All Plant Sequences

>Glyma08g45940.1   sequence type=predicted peptide   gene model=Glyma08g45940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSPPPSLFFLLLLALFAATASCLTCTTQKLTDSNKKLFSNCLDLPSLDSFLHWTHDPANASLSVAFVAAPPNPGGWVSWGINPSGTGMVGAQVLAAYKAEGTGAVTVKTLDLKSYSAIVPGKLSLDVWDMRGEEVRGVIRIFATVKVPDKAESVNQVWQVGPSVTAGRIDRHDFAPPNINAKGVLSFNGSQSGGGGGGAVDPVTMKKNIHGILNTVSWGVLFPLGVIIARYMRTFPSADPAWFYLHVGCQVSSYAIGVAGWGTGMKLGSQSEGIQYSAHRYIGIFLFSFATLQIFALFLRPVKDHKYRYIWNIYHHSIGYSIIILGIINIFRGFSILHPDQKWKSTYTAVLIALGAVALFLEVITWIVVLKRKSGKSTKTYDGHNNGQSREDPLTI*

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