Glyma08g45840 - SoyBase

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Report for Sequence Feature Glyma08g45840

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45113200
stop:	45117586
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1KYZ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KYZ2_SOYBN	SoyBase	E_val: 4.00E-108	ISS

Expression Patterns of Glyma08g45840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g45840 not represented in the dataset	Glyma08g45840 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g344600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g45840

Limit To All Plant Sequences

>Glyma08g45840.2   sequence type=transcript   gene model=Glyma08g45840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATTTCCTCAAGTCCAAGTGTCGAGTTCCTACGTTATGTGTGAGAAAACGTGTAACCCTCTCAAGAGCTTTCAAAGATTCGTTCTGTTCATATAAATCTTTTTCTTTTTCTTTTTCACGAACACACCCATCACAGTGACGAAACCTCCTCCTTCTGTTTTCTGCAGAGTATCTCTTAATCTGAAATTGCTACACACAACTTCTATTCTTCTAAACTTTTTCTGAGTTCTTCCATTCCCACGTGCGAATTGGTGCTGTGATCAACAATGGCTGCACAAGTGAAGAGCTTTCACCTTAACTCCCACTCCAAGAAACCCTCTCTACCGGTATATAAATAATATTTCTTTTGCCGTGATATTAAGTAACTCGCAACTTCTATCAAGACCAGAACCAGCAAAATGCAGAACATGTCAAGTGCAAGAGGAGAAGAATTGATGAAGGGGGTGTTCAGAAAGAGGGCTATTGACAAGGGGAATAATGTGATAGAAAGCAACCAAATAAATGACTCCAAGAAAAAGTCCAATGTTTCTGGTCATCACAATCAGCAGAATCAAGGTGGAAACGAGTTGATGAATGTGGTAAGGAAAGGGACAGAGAAGTTGAGCATAAAAGAAAACAAATGCAAATCAGGTCCACATTCAAAGGTGTGCTACTGTGCACCAACCACTCATGAAGGTTCATTCAGGTGCCGTCTCCACCGCAAGAAGTCAGCCACAGATGATAATAATAAGAGCAATCTGAGGTTGAATTCCCAGTATGGGATGGTGGAGTTTCAGCCTCAGATGCCAAGGTATGGTAGGGTTTCCTGTGATCAAGTTGGAACACGTGATAGCCTAATCAAACTCTCTAGGATGGATTCTGTTTAAGGACTGATCTACGTTTCATTTTCAGCTTATAGACTAAGACTATGTATTTGGGTCTATATGTGAGATATGAAAAAAATGTTAACAGCTTTAGTAGGCTTTGCTTATGATTTTTACTTTTTAGGTGTTGCGGTGTACATGTCACAAAGCTTTCCATGAAACCCCTGCAATTTTAGAAGGGATTAGGAAGAATTTCCATTTCCAATTCCACTATCAAAGATACATTTTCTTCACCGTTTATGTTTTAGTACAATGTTCCAGTACAATTAAGTAATTACTGTGAACTTGCTGCCA

>Glyma08g45840.3   sequence type=transcript   gene model=Glyma08g45840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATTTCCTCAAGTCCAAGTGTCGAGTTCCTACGTTATGTGTGAGAAAACGTGTAACCCTCTCAAGAGCTTTCAAAGATTCGTTCTGTTCATATAAATCTTTTTCTTTTTCTTTTTCACGAACACACCCATCACAGTGACGAAACCTCCTCCTTCTGTTTTCTGCAGAGTATCTCTTAATCTGAAATTGCTACACACAACTTCTATTCTTCTAAACTTTTTCTGAGTTCTTCCATTCCCACGTGCGAATTGGTGCTGTGATCAACAATGGCTGCACAAGTGAAGAGCTTTCACCTTAACTCCCACTCCAAGAAACCCTCTCTACCAACCAGCAAAATGCAGAACATGTCAAGTGCAAGAGGAGAAGAATTGATGAAGGGGGTGTTCAGAAAGAGGGCTATTGACAAGGGGAATAATGTGATAGAAAGCAACCAAATAAATGACTCCAAGAAAAAGTCCAATGTTTCTGGTCATCACAATCAGCAGAATCAAGGTGGAAACGAGTTGATGAATGTGGTAAGGAAAGGGACAGAGAAGTTGAGCATAAAAGAAAACAAATGCAAATCAGGTCCACATTCAAAGGTGTGCTACTGTGCACCAACCACTCATGAAGGTTCATTCAGGTGCCGTCTCCACCGCAAGAAGTCAGCCACAGATGATAATAATAAGAGCAATCTGAGGTTGAATTCCCAGTATGGGATGGTGGAGTTTCAGCCTCAGATGCCAAGTGCTGTGATCATCAATGGCTGGACAAATGAAGAGCTTTCACCTGAAATCTCACTACAAGAAAACCTCTCACCTCTCCAGCAAAAAGTGAAAAAGTACAACAGAACAAGAATTGATGAATGCAGTGGTCAGAACCAGGACTATTTACATAGAAAGCAGCAAACAGGGGAATGATGACTCCAAGAAAGCAGCAACCACTAATGAAGTTTCATGCAAGTATTCCAGCCTCTACAGCAAGTCATCAGCCACAAAAAATAAGAGCAACCTGAAGTTGAATTCCAAGTCCACACATGGGATAGTGGAGAATCAGCCTCATTTGCCAAGGTTTAGTAGGATTCGTGCTCAACTTGAAAGACATAAACATGATAGCCGAATGAAAGTGAAACTATCTAGAGTGGATTCTCTTTAAGGACTAATCAGCTTAGTTTTCATGTTTAACTTATATTTATGGACTATGTGTGTGTGTTTGAATGGGTTTTAGTAAAACTGATTTTTAAT

Coding sequences of Glyma08g45840

Limit To All Plant Sequences

>Glyma08g45840.1   sequence type=CDS   gene model=Glyma08g45840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCACAAGTGAAGAGCTTTCACCTTAACTCCCACTCCAAGAAACCCTCTCTACCAACCAGCAAAATGCAGAACATGTCAAGTGCAAGAGGAGAAGAATTGATGAAGGGGGTGTTCAGAAAGAGGGCTATTGACAAGGGGAATAATGTGATAGAAAGCAACCAAATAAATGACTCCAAGAAAAAGTCCAATGTTTCTGGTCATCACAATCAGCAGAATCAAGGTGGAAACGAGTTGATGAATGTGGTAAGGAAAGGGACAGAGAAGTTGAGCATAAAAGAAAACAAATGCAAATCAGGTCCACATTCAAAGGTGTGCTACTGTGCACCAACCACTCATGAAGGTTCATTCAGGTGCCGTCTCCACCGCAAGAAGTCAGCCACAGATGATAATAATAAGAGCAATCTGAGGTTGAATTCCCAGTATGGGATGGTGGAGTTTCAGCCTCAGATGCCAAGGTATGGTAGGGTTTCCTGTGATCAAGTTGGAACACGTGATAGCCTAATCAAACTCTCTAGGATGGATTCTGTTTAA

>Glyma08g45840.2   sequence type=CDS   gene model=Glyma08g45840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAACATGTCAAGTGCAAGAGGAGAAGAATTGATGAAGGGGGTGTTCAGAAAGAGGGCTATTGACAAGGGGAATAATGTGATAGAAAGCAACCAAATAAATGACTCCAAGAAAAAGTCCAATGTTTCTGGTCATCACAATCAGCAGAATCAAGGTGGAAACGAGTTGATGAATGTGGTAAGGAAAGGGACAGAGAAGTTGAGCATAAAAGAAAACAAATGCAAATCAGGTCCACATTCAAAGGTGTGCTACTGTGCACCAACCACTCATGAAGGTTCATTCAGGTGCCGTCTCCACCGCAAGAAGTCAGCCACAGATGATAATAATAAGAGCAATCTGAGGTTGAATTCCCAGTATGGGATGGTGGAGTTTCAGCCTCAGATGCCAAGGTATGGTAGGGTTTCCTGTGATCAAGTTGGAACACGTGATAGCCTAATCAAACTCTCTAGGATGGATTCTGTTTAA

>Glyma08g45840.3   sequence type=CDS   gene model=Glyma08g45840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCACAAGTGAAGAGCTTTCACCTTAACTCCCACTCCAAGAAACCCTCTCTACCAACCAGCAAAATGCAGAACATGTCAAGTGCAAGAGGAGAAGAATTGATGAAGGGGGTGTTCAGAAAGAGGGCTATTGACAAGGGGAATAATGTGATAGAAAGCAACCAAATAAATGACTCCAAGAAAAAGTCCAATGTTTCTGGTCATCACAATCAGCAGAATCAAGGTGGAAACGAGTTGATGAATGTGGTAAGGAAAGGGACAGAGAAGTTGAGCATAAAAGAAAACAAATGCAAATCAGGTCCACATTCAAAGGTGTGCTACTGTGCACCAACCACTCATGAAGGTTCATTCAGGTGCCGTCTCCACCGCAAGAAGTCAGCCACAGATGATAATAATAAGAGCAATCTGAGGTTGAATTCCCAGTATGGGATGGTGGAGTTTCAGCCTCAGATGCCAAGTGCTGTGATCATCAATGGCTGGACAAATGAAGAGCTTTCACCTGAAATCTCACTACAAGAAAACCTCTCACCTCTCCAGCAAAAAGTGAAAAAGTACAACAGAACAAGAATTGATGAATGCAGTGGTCAGAACCAGGACTATTTACATAGAAAGCAGCAAACAGGGGAATGA

Predicted protein sequences of Glyma08g45840

Limit To All Plant Sequences

>Glyma08g45840.1   sequence type=predicted peptide   gene model=Glyma08g45840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAQVKSFHLNSHSKKPSLPTSKMQNMSSARGEELMKGVFRKRAIDKGNNVIESNQINDSKKKSNVSGHHNQQNQGGNELMNVVRKGTEKLSIKENKCKSGPHSKVCYCAPTTHEGSFRCRLHRKKSATDDNNKSNLRLNSQYGMVEFQPQMPRYGRVSCDQVGTRDSLIKLSRMDSV*

>Glyma08g45840.2   sequence type=predicted peptide   gene model=Glyma08g45840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNMSSARGEELMKGVFRKRAIDKGNNVIESNQINDSKKKSNVSGHHNQQNQGGNELMNVVRKGTEKLSIKENKCKSGPHSKVCYCAPTTHEGSFRCRLHRKKSATDDNNKSNLRLNSQYGMVEFQPQMPRYGRVSCDQVGTRDSLIKLSRMDSV*

>Glyma08g45840.3   sequence type=predicted peptide   gene model=Glyma08g45840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAQVKSFHLNSHSKKPSLPTSKMQNMSSARGEELMKGVFRKRAIDKGNNVIESNQINDSKKKSNVSGHHNQQNQGGNELMNVVRKGTEKLSIKENKCKSGPHSKVCYCAPTTHEGSFRCRLHRKKSATDDNNKSNLRLNSQYGMVEFQPQMPSAVIINGWTNEELSPEISLQENLSPLQQKVKKYNRTRIDECSGQNQDYLHRKQQTGE*

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