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Report for Sequence Feature Glyma08g45830

Feature Type:gene_model
Chromosome:Gm08
Start:45098876
stop:45101479
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g45830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48500AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19653235-19654017 FORWARD LENGTH=167 SoyBaseE_val: 2.00E-33ISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q9LV64UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAD28645.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LV64_ARATH SoyBaseE_val: 4.00E-28ISS
UniRef100_UPI0002339291UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339291 related cluster n=1 Tax=unknown RepID=UPI0002339291 SoyBaseE_val: 1.00E-105ISS

Expression Patterns of Glyma08g45830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g45830
ParalogEvidenceComments
Glyma18g26140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g45830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g344400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g45830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g45830
>Glyma08g45830.2   sequence type=CDS   gene model=Glyma08g45830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAATGGTACTACAAGAAGAGCCAAGTGCCAGCATTTGGGAGTTGGGATTGGAACGATAACCTACCTTTCACACAGTGCTTCGAGTCAGCGAGGCAAGCTGGTTTGCTACGATGTAGTAATTACTCTGAGTCTGAGGAACGTGACCTTTATGTTACAGGGGATTTGTACGAGAATAATGTTGTCACACCCGCCATGATCGTTGTTCCTCGCAGAAGGGCAAATGTGGTTGACCAGCATGAAAAAGAAACGAAATTAAAGAATTGGATCAGTGATGATGTGGATAGTGAATCACCCAGCCCAACTCCACTGCCAAGGCCAACTTCAAAACCCGTTGATGAGGACTTGTACAAGATCTCACCGGGGCTTGTTTATGCCAAAGCTAAAAAGAAGAGAGGGTTGTGCTTCTTTTCTAGTTGCTTGTTACCAACTTGCATCGCTTGA
Predicted protein sequences of Glyma08g45830
>Glyma08g45830.2   sequence type=predicted peptide   gene model=Glyma08g45830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEWYYKKSQVPAFGSWDWNDNLPFTQCFESARQAGLLRCSNYSESEERDLYVTGDLYENNVVTPAMIVVPRRRANVVDQHEKETKLKNWISDDVDSESPSPTPLPRPTSKPVDEDLYKISPGLVYAKAKKKRGLCFFSSCLLPTCIA*






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