Report for Sequence Feature Glyma08g45800
Feature Type: gene_model
Chromosome: Gm08
Start: 45074209
stop: 45082385
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g45800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G48460 AT
Annotation by Michelle Graham. TAIR10: Actin binding Calponin homology (CH) domain-containing protein | chr5:19636225-19639365 REVERSE LENGTH=654
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0030048 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin filament-based movement
SoyBase N/A ISS
GO:0051645 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi localization
SoyBase N/A ISS
GO:0051646 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitochondrion localization
SoyBase N/A ISS
GO:0060151 GO-bp
Annotation by Michelle Graham. GO Biological Process: peroxisome localization
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003779 GO-mf
Annotation by Michelle Graham. GO Molecular Function: actin binding
SoyBase N/A ISS
KOG0046
KOG
Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily
JGI ISS
PTHR19961 Panther
FIMBRIN/PLASTIN
JGI ISS
PTHR19961:SF9 Panther
FIMBRIN-RELATED
JGI ISS
PF00307 PFAM
Calponin homology (CH) domain
JGI ISS
UniRef100_G7LEC3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Fimbrin n=1 Tax=Medicago truncatula RepID=G7LEC3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KYY8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYY8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g45800
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g45800
Paralog Evidence Comments
Glyma18g26151 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g45800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g344100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g45800
Coding sequences of Glyma08g45800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g45800.1 sequence type=CDS gene model=Glyma08g45800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTGGTCACTGGGGCATTCTTGTGTCAGATCCATGGCTTCAGAACCAGTTCACTCAGGTGGAGCTTCGCAGCTTGAAATCCCAATTTGTGAGCATGAGGAGGGAGAGTGGAAGGCTTACGGTTGGAGACTTGGCTTCCAAGATGGCAAGGTTGAAGGTTGTGGGAGAGAATCTGAGTGAAGAAGAGAGAGGCTCTTATATTCAGGATTTGTATCAGAACACAGGTGAAGAGGTCGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTTCAAACTTTTGCAAGTTCTAGGACAGGGAGTAATGCAAAAAACTCCTCAGCATTCCTCAAGGCTGCCACTACCACATTGCTTCACACCATAAGTGAATCCGAGAAGGCAGCTTATGTTGCACATATAAATAACTATCTTGCAGGAGATGAATTCCTCAAGAAATGCCTTCCTATTGATCCTTCAACCAACGACTTATTTGAAATTGCAAAAGATGGTGTTCTTCTTTGTAAGCTTATTAATGTGGCAGTTCCAAGGACCATTGATGAACGGGCGATCAATACAAAAAGATTACTTAATCCATGGGAAAGGAATGAAAACCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACAGTAGTCAACATTGGAACTCAAGACTTCATTGAAGGAAGGCGTCATCTGGTGCTTGGATTGATTTCACAGATTATTAAGATACAATTATTGGCGGATCTGAACCTGAAGAAAACTCCACAGCTTTTGGAGTTGATCAATGATAGCGAGGGTATGGAAGAGTTGATGAGTCTGGCACCAGAAAAGATCTTGTTGAGGTGGATGAATTTCCATTTGAAGAAAACATGTTACAAGAAGATAGTCACGAACTTCTCCTCGGATGTTAGGGATGCAGAGGCTTATGCTCACCTTCTAAATGTTCTTGCACCCGAATACACTAATCCATCCACATTGGCTGTCAAAAATCCTTACGAACGAGCAAAATTAGTTCTTGAGCATGCTGATAAGATGGGCTGCAAGCGATACATAACTGCAAGAGATATAGTGGAAGGTTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACACAGGAATGGACTGTCAACCCAAGCAAAACAGAGTTCTCTCCTTGAAAACTTGCTAGATGACACCCAAGACTCTAGAGAAGAGAGAGCATTTCGCCTCTGGATTAATAGCCTTGGAAATTCAATATACATCAACAATGTCTTTGAGGATGTCAGAAATGGGTGGGTACTTTTGGAGACTTTGGACAAGGTTTCACCAGGAATTGTTAATTGGAAGATTGCTAACAAGCCACCTATTAAGTTGCCATTTAAAAAAGTAGAGAATTGCAACCAAGTTGTGAAAATAGGGAAACAGCTTAAATTTTCCCTTGTAAATGTTGCTGGGAATGACATTGTGCAGGGTTATAAAAAATTAATCCTAGCATATTTGTGGCAATTGATGCGATACAACATCCTTCAACTTCTAAAGAACCTGAGATTTCACTCTCATGGGAAGGAAATAATTGATGCTGATATTCTGCGATGGGCGAACAGCAAAGTCAGCAGTTTGGGAAGTCAAAGCCGAATGGATAGTTTCAAGGATAAAAGTTTATCAGATGGAATTTTTTTCCTTGAACTTCTTAGTTCTGTGCAACCTAGAGCTGTAAATTGGGGTCTTGTAACAAAAGGGGTAACCGATCAGGAGAAAATGATGAATGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCAATATTCTTGCTTCCCGAAGATATCACTGAGGTGAATCAAAAGATGATCCTTACACTAACAGCTAGTATAATGTATTGGTTCTTAAAGCACCCTCTGGAGGAAAGAACAGTAGCAAATTCAGACAGTGAGAGTGGGAGTCAATTGGAGACTACATCAAATTCAACACTGGATGACTCTGCTTCTGATTCATCAACAGAGGAGAATGGGAGCATGTAA
Predicted protein sequences of Glyma08g45800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g45800.1 sequence type=predicted peptide gene model=Glyma08g45800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSGHWGILVSDPWLQNQFTQVELRSLKSQFVSMRRESGRLTVGDLASKMARLKVVGENLSEEERGSYIQDLYQNTGEEVDFELFLKVYLKLQTFASSRTGSNAKNSSAFLKAATTTLLHTISESEKAAYVAHINNYLAGDEFLKKCLPIDPSTNDLFEIAKDGVLLCKLINVAVPRTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGLISQIIKIQLLADLNLKKTPQLLELINDSEGMEELMSLAPEKILLRWMNFHLKKTCYKKIVTNFSSDVRDAEAYAHLLNVLAPEYTNPSTLAVKNPYERAKLVLEHADKMGCKRYITARDIVEGSPNLNLAFVAHIFQHRNGLSTQAKQSSLLENLLDDTQDSREERAFRLWINSLGNSIYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKLPFKKVENCNQVVKIGKQLKFSLVNVAGNDIVQGYKKLILAYLWQLMRYNILQLLKNLRFHSHGKEIIDADILRWANSKVSSLGSQSRMDSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPLEERTVANSDSESGSQLETTSNSTLDDSASDSSTEENGSM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
