Glyma08g45790 - SoyBase

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Report for Sequence Feature Glyma08g45790

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45057119
stop:	45060867
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25410	AT	Annotation by Michelle Graham. TAIR10: Sodium Bile acid symporter family \| chr3:9214565-9216331 REVERSE LENGTH=431	SoyBase	E_val: 0	ISS
GO:0006814	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transport	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0008508	GO-mf	Annotation by Michelle Graham. GO Molecular Function: bile acid:sodium symporter activity	SoyBase	N/A	ISS
KOG2718	KOG	Na+-bile acid cotransporter	JGI		ISS
PTHR10361	Panther	SODIUM-BILE ACID COTRANSPORTER RELATED	JGI		ISS
PTHR10361:SF0	Panther	BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN	JGI		ISS
PF01758	PFAM	Sodium Bile acid symporter family	JGI		ISS
UniRef100_G7KZ42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sodium-dependent transporter, putative n=1 Tax=Medicago truncatula RepID=G7KZ42_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KYY6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYY6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g344000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g45790

Limit To All Plant Sequences

>Glyma08g45790.2   sequence type=transcript   gene model=Glyma08g45790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCCCCCAACCCCAACCCCAACCAACTCAGCCACTCATTCACAGCCGTGTATCACTCAAATAATAAGTATTTGATTCTACACAATCAAACACAGCCATCACTGTCTCTCTCCAACTTTCACTTTCGCATACCTTCACTTCATATAATATGCCAAACTCTTTCCATAACCTCATCTTCTCTTCTCACAACACGTTCCCATTCCTCTCTCCCTAACCTCACCGGCAGCGCCTTCACGGTCATCGCCGCCGACACCCCCCCTCCCTTCTTAATGGCCTCAATCCCAGTCGCGTGTTCCACACACCCCAGGCTCCAAGCCTCACCCTTATTCCAATCCCACGCGCGCTCCCGCAGCGCGTCCTTCTGGAGGGTTCAGCAGAGGGGTTCGATGGGTGGTGGTGGTGCCGCGTCGAGTTTCGCCTGCTCCACTTCTCAGTTCCGCGGCGGATTCGGGTTCCGGTTCCACCGGAGACAGGGGAAGTTCTCGTTGCTCTCTTTCGGCGGTGACGACGACGGAAGCGCCGTTGGCGGCGAAGCGAGAGAAAGAGACTTGTCTCAGCTTCTCTCCGCATTGCTTCCCGTTGTTGTTGCTGCCACCGCCGTTGCCGCTCTCGCTAAACCCTCCACTTTTACTTGGGTATCAAAAGAGTTATATGCTCCTGCACTTGGTGGGATTATGTTGTCTATTGGAATAAGACTATCCGTAGATGACTTCGCTCTTGCATTTAAAAGACCTTTGCCACTTACCATTGGGTTAATTGCGCAATACGTGCTTAAGCCTGTTCTTGGAATCTTGGTTGCAAAGGCTTTTGGTTTGTCTAGGATGTTTTACGCGGGCTTTGTCCTCACAGCTTGTGTTTCGGGGGCTCAACTATCCAGCTATGCAAACTTCTTAAGCAAAGGGGATGTAGCCTTGGGCATTCTTCTCACAAGCTATACCACAATTGCATCAGTTATTGTTACACCTCTGTTAACTGGTCTTCTGATTGGATCAGTAGTGCCAGTTGATGCAGTTGCCATGTCAAAGTCAATTCTGCAGGTTGTACTTGTTCCGGTGACCCTTGGTCTTCTTCTCAATACATATGCAAAGTCAGTTGTATCTGTTCTTCAACCTGTGATGCCCTTTGTTGCCATGATTTGTACTTCACTGTGCATTGGCAGCCCTCTTGCTTTAAACAGGAGTCAAATTTTGACAGGCGAAGGCAGGAAGAACAGGTGAGCAGGACGATTTCACTATGCACTGGAATGCAGAGTTCCACCCTTGCAGGACTCCTTGCAACGCAATTTTTGGATAGTAGTCAGGCAGTTCCTCCTGCATGTTCTGTCATTGCTATGGCTATAATGGGTCTCTGTCTTGCCTCTTTTTGGGGAAGTGGCTTTGTAATTAGAAACCTGTTGCCATTACCTCCTCTCAGAACCAATTCTGCTGTTAAAACTTAACTTTTTTGTTTCTGATGCGTGTCATTGAGGCTTATTTTTTAGCATCAGTTGGAGGGTGGAAACTTGATAAATTTGATCTTTTAATGGTAACAATTAGAAATGGCTAGGGAAGGTAGATTAATAGGAAAAATTCAAGTGTATAGGTTAGTCACATACAAATCAGCAAGAAACAGGTTTCATTAGTAACATTGTAACATTATCCAGAGAAAAAAGTTACATAGTAACGGGGGGTATAGATGCATAGATACTATCATTTGTTACCTAGCTGCAAATCAGTACACTTCTGTACATAGACTCAAACTATGTCATAGATCATTTACCAATTAACAGTTTTCTCTGTCCCTCTCTGCGTTTCTTCCATTGTGTGAACCTGTGATCTTCAAACGAATGTAGTAGCCAAACTCTTCTTCATTTTGCAGGGAATGCTCATTTTTATGTTTAAAGTTTTTCTATATTGCAGTTTACAAGGAACTACAGATATTTAAAAAT

Coding sequences of Glyma08g45790

Limit To All Plant Sequences

>Glyma08g45790.1   sequence type=CDS   gene model=Glyma08g45790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAATCCCAGTCGCGTGTTCCACACACCCCAGGCTCCAAGCCTCACCCTTATTCCAATCCCACGCGCGCTCCCGCAGCGCGTCCTTCTGGAGGGTTCAGCAGAGGGGTTCGATGGGTGGTGGTGGTGCCGCGTCGAGTTTCGCCTGCTCCACTTCTCAGTTCCGCGGCGGATTCGGGTTCCGGTTCCACCGGAGACAGGGGAAGTTCTCGTTGCTCTCTTTCGGCGGTGACGACGACGGAAGCGCCGTTGGCGGCGAAGCGAGAGAAAGAGACTTGTCTCAGCTTCTCTCCGCATTGCTTCCCGTTGTTGTTGCTGCCACCGCCGTTGCCGCTCTCGCTAAACCCTCCACTTTTACTTGGGTATCAAAAGAGTTATATGCTCCTGCACTTGGTGGGATTATGTTGTCTATTGGAATAAGACTATCCGTAGATGACTTCGCTCTTGCATTTAAAAGACCTTTGCCACTTACCATTGGGTTAATTGCGCAATACGTGCTTAAGCCTGTTCTTGGAATCTTGGTTGCAAAGGCTTTTGGTTTGTCTAGGATGTTTTACGCGGGCTTTGTCCTCACAGCTTGTGTTTCGGGGGCTCAACTATCCAGCTATGCAAACTTCTTAAGCAAAGGGGATGTAGCCTTGGGCATTCTTCTCACAAGCTATACCACAATTGCATCAGTTATTGTTACACCTCTGTTAACTGGTCTTCTGATTGGATCAGTAGTGCCAGTTGATGCAGTTGCCATGTCAAAGTCAATTCTGCAGGTTGTACTTGTTCCGGTGACCCTTGGTCTTCTTCTCAATACATATGCAAAGTCAGTTGTATCTGTTCTTCAACCTGTGATGCCCTTTGTTGCCATGATTTGTACTTCACTGTGCATTGGCAGCCCTCTTGCTTTAAACAGGAGTCAAATTTTGACAGGCGAAGGTCTCCGGTTGGTTTTTCCAGTATTAACATTTCATGTTGTTGCCTTCACTTTAGGATATTGGTTCTCAAAGATTCCATCCTTGAGGCAGGAAGAACAGGTGAGCAGGACGATTTCACTATGCACTGGAATGCAGAGTTCCACCCTTGCAGGACTCCTTGCAACGCAATTTTTGGATAGTAGTCAGGCAGTTCCTCCTGCATGTTCTGTCATTGCTATGGCTATAATGGGTCTCTGTCTTGCCTCTTTTTGGGGAAGTGGCTTTGTAATTAGAAACCTGTTGCCATTACCTCCTCTCAGAACCAATTCTGCTGTTAAAACTTAA

>Glyma08g45790.2   sequence type=CDS   gene model=Glyma08g45790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAATCCCAGTCGCGTGTTCCACACACCCCAGGCTCCAAGCCTCACCCTTATTCCAATCCCACGCGCGCTCCCGCAGCGCGTCCTTCTGGAGGGTTCAGCAGAGGGGTTCGATGGGTGGTGGTGGTGCCGCGTCGAGTTTCGCCTGCTCCACTTCTCAGTTCCGCGGCGGATTCGGGTTCCGGTTCCACCGGAGACAGGGGAAGTTCTCGTTGCTCTCTTTCGGCGGTGACGACGACGGAAGCGCCGTTGGCGGCGAAGCGAGAGAAAGAGACTTGTCTCAGCTTCTCTCCGCATTGCTTCCCGTTGTTGTTGCTGCCACCGCCGTTGCCGCTCTCGCTAAACCCTCCACTTTTACTTGGGTATCAAAAGAGTTATATGCTCCTGCACTTGGTGGGATTATGTTGTCTATTGGAATAAGACTATCCGTAGATGACTTCGCTCTTGCATTTAAAAGACCTTTGCCACTTACCATTGGGTTAATTGCGCAATACGTGCTTAAGCCTGTTCTTGGAATCTTGGTTGCAAAGGCTTTTGGTTTGTCTAGGATGTTTTACGCGGGCTTTGTCCTCACAGCTTGTGTTTCGGGGGCTCAACTATCCAGCTATGCAAACTTCTTAAGCAAAGGGGATGTAGCCTTGGGCATTCTTCTCACAAGCTATACCACAATTGCATCAGTTATTGTTACACCTCTGTTAACTGGTCTTCTGATTGGATCAGTAGTGCCAGTTGATGCAGTTGCCATGTCAAAGTCAATTCTGCAGGTTGTACTTGTTCCGGTGACCCTTGGTCTTCTTCTCAATACATATGCAAAGTCAGTTGTATCTGTTCTTCAACCTGTGATGCCCTTTGTTGCCATGATTTGTACTTCACTGTGCATTGGCAGCCCTCTTGCTTTAAACAGGAGTCAAATTTTGACAGGCGAAGGCAGGAAGAACAGGTGA

Predicted protein sequences of Glyma08g45790

Limit To All Plant Sequences

>Glyma08g45790.1   sequence type=predicted peptide   gene model=Glyma08g45790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIPVACSTHPRLQASPLFQSHARSRSASFWRVQQRGSMGGGGAASSFACSTSQFRGGFGFRFHRRQGKFSLLSFGGDDDGSAVGGEARERDLSQLLSALLPVVVAATAVAALAKPSTFTWVSKELYAPALGGIMLSIGIRLSVDDFALAFKRPLPLTIGLIAQYVLKPVLGILVAKAFGLSRMFYAGFVLTACVSGAQLSSYANFLSKGDVALGILLTSYTTIASVIVTPLLTGLLIGSVVPVDAVAMSKSILQVVLVPVTLGLLLNTYAKSVVSVLQPVMPFVAMICTSLCIGSPLALNRSQILTGEGLRLVFPVLTFHVVAFTLGYWFSKIPSLRQEEQVSRTISLCTGMQSSTLAGLLATQFLDSSQAVPPACSVIAMAIMGLCLASFWGSGFVIRNLLPLPPLRTNSAVKT*

>Glyma08g45790.2   sequence type=predicted peptide   gene model=Glyma08g45790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIPVACSTHPRLQASPLFQSHARSRSASFWRVQQRGSMGGGGAASSFACSTSQFRGGFGFRFHRRQGKFSLLSFGGDDDGSAVGGEARERDLSQLLSALLPVVVAATAVAALAKPSTFTWVSKELYAPALGGIMLSIGIRLSVDDFALAFKRPLPLTIGLIAQYVLKPVLGILVAKAFGLSRMFYAGFVLTACVSGAQLSSYANFLSKGDVALGILLTSYTTIASVIVTPLLTGLLIGSVVPVDAVAMSKSILQVVLVPVTLGLLLNTYAKSVVSVLQPVMPFVAMICTSLCIGSPLALNRSQILTGEGRKNR*

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