Glyma08g45730 - SoyBase

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Report for Sequence Feature Glyma08g45730

Feature Type:	gene_model
Chromosome:	Gm08
Start:	45019793
stop:	45026581
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48450	AT	Annotation by Michelle Graham. TAIR10: SKU5 similar 3 \| chr5:19632791-19635612 REVERSE LENGTH=621	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_G7KX02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Monocopper oxidase-like protein SKU5 n=1 Tax=Medicago truncatula RepID=G7KX02_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KYY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYY2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g343500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45730

Limit To All Plant Sequences

>Glyma08g45730.1   sequence type=CDS   gene model=Glyma08g45730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAGAATTGGCAATTTCATTCACTTCAGAAGTTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCACTGAGCTTGAGAAGAGATATACTCAAAAGAGACAGATAGATTCACTGAGAAACACGATGCCGTCATTGCCTTCTTCTTGGTTCTTCACAACGCTTCTACTATGCTTCTTCTTACATGTTACTTTTGCAGGTGACCCTTATGTTTTCTATGATTGGACCGTGTCCTACACCTCAGCCTCCCCACTTGGAGTTAAACAGAAGGTAATTGGGATCAATGGACAATTTCCAGGACCAACTCTGAATGTCACCACAAACTGGAATGTAGTTGTCAATGTCAAGAATAATCTTGATGAACCATTACTTCTAACATGGAATGGTATACAACATAGGAAAAACTCTTGGCAGGATGGAGTTTCAGGAACTAATTGTCCAATTCCAGCAGGTTGGAATTGGACATATGAGTTTCAAGTTAAAGATCAGATAGGGAGTTTTTTCTACTTCCCTTCCCTAAATTTCCAGAGGGCTGCAGGAGGATATGGAGGAATCATCATAAATAACCGACCAGTTATTCCTGTTCCTTTTGGATTACCAGATGGAGATATTACCATATTTTTGAGTGATTGGTACACCAGGAGTCATAAGGAACTCAGGAAAGATGTTGAAGATGGGATTGACCTTGGAGTCCCTGATGGTGTGCTTATTAATGGACTAGGTCCTTATCGCTACGATGAAAATCTTGTCCCAAACGGCATTTCTTACCGAATAATAAATGTGGAACCAGGGAAAACATATCGCCTGCGTGTTCACAATGTTGGTATCTCAGCAAGCTTGAATTTTAGGATACAAAATCACAACTTGCTTCTGGTGGAGACTGAAGGATCATACACAGTTCAGCAAAACTACACAAACATGGATATTCATGTGGGTCAGTCATATTCATTTTTGGTTACAATGGATCAAAATGCCAGCACTGATTACTATATTGTTGCCAGTCCTCGGTTTGTTAATTCATCGTGGGCTGGTGCTACTGGAGTTGCCATTTTGCACTACTCCAATTCTCAGGGACCTGCTTCAGGCCCTCTTCCCAGTCTTTTGGGTGAAGACGATCCTTCATTTTCGATAAATCAAGCAAGATCAATAAGGTGGAATGTGTCTGCTGGTGCTGCACGTCCAAATCCACAGGGTTCCTTCAAATATGGTGATATTACTGTGACAGATGTATATGTTATTCTTAATAGACCTCCAGAGCTTATAAATGGAAAATGGCGAACTACCCTTAATGGTATATCATATTTACCACCTCCAACACCCCTGAAGCTTGTGCAACAATTTAACATTCTAGGGGTGTACAAGATTGATTTTCCAAATAGATTGATGAACAGACCCCCAAAAGTTGATACTTCTCTGATTAATGGAACTTACAGAGGTTTTATGGAAATAATCTTTCAAAACAATGACACCACAGTCCAGAGCTACCATTTGGATGGCTATGCATTCTTTGTTGTTGGCATGGATTTTGGAGTATGGACAGAAAATAGCAGAAGTACTTATAATAAGTGGGATGGTGTGGCTCGCTGCACTACACAGGTCTTTCCTGGTGCTTGGACAGCCATTTTGGTATCTCTTGACAACGCCGGTATTTGGAACCTTCGTGCAGAGAACCTCAACTCGTGGTATCTGGGCCAAGAAGTTTATGTGCATGTTGTAAACCCAGAGAAAGACAACAATGAAAATACTTTGCCTGACAATGCAATTTTCTGTGGCTTACTTTCTTCCCTTCAAAAGGATCAGTCTCACAAATTCCAGTTCTCTGTGGGATCACCTTTTTGCAGTACTTCTATAATTTTGTTGTTCATGCTATTTCTAGCATTACTTGAAAGTTTGTTTTGGTATGTGGAGTGTTGA

Predicted protein sequences of Glyma08g45730

Limit To All Plant Sequences

>Glyma08g45730.1   sequence type=predicted peptide   gene model=Glyma08g45730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHRIGNFIHFRSSLSLSLSLSLCTELEKRYTQKRQIDSLRNTMPSLPSSWFFTTLLLCFFLHVTFAGDPYVFYDWTVSYTSASPLGVKQKVIGINGQFPGPTLNVTTNWNVVVNVKNNLDEPLLLTWNGIQHRKNSWQDGVSGTNCPIPAGWNWTYEFQVKDQIGSFFYFPSLNFQRAAGGYGGIIINNRPVIPVPFGLPDGDITIFLSDWYTRSHKELRKDVEDGIDLGVPDGVLINGLGPYRYDENLVPNGISYRIINVEPGKTYRLRVHNVGISASLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSYSFLVTMDQNASTDYYIVASPRFVNSSWAGATGVAILHYSNSQGPASGPLPSLLGEDDPSFSINQARSIRWNVSAGAARPNPQGSFKYGDITVTDVYVILNRPPELINGKWRTTLNGISYLPPPTPLKLVQQFNILGVYKIDFPNRLMNRPPKVDTSLINGTYRGFMEIIFQNNDTTVQSYHLDGYAFFVVGMDFGVWTENSRSTYNKWDGVARCTTQVFPGAWTAILVSLDNAGIWNLRAENLNSWYLGQEVYVHVVNPEKDNNENTLPDNAIFCGLLSSLQKDQSHKFQFSVGSPFCSTSIILLFMLFLALLESLFWYVEC*

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