SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25430 | AT | Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:9221204-9223700 FORWARD LENGTH=618 | SoyBase | E_val: 0 | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004540 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease activity | SoyBase | N/A | ISS |
| KOG1990 | KOG | Poly(A)-specific exoribonuclease PARN | JGI | ISS | |
| PTHR15092 | Panther | POLY(A)-SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 | JGI | ISS | |
| PTHR15092:SF7 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04857 | PFAM | CAF1 family ribonuclease | JGI | ISS | |
| UniRef100_B9SMP5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease, putative n=1 Tax=Ricinus communis RepID=B9SMP5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233911E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233911E related cluster n=1 Tax=unknown RepID=UPI000233911E | SoyBase | E_val: 0 | ISS |
|
Glyma08g45725 not represented in the dataset |
Glyma08g45725 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g343300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g45725.1 sequence type=CDS gene model=Glyma08g45725 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTGGGTGTTTGAGTTGCGGAGTCGTTCCCTCTGCACGTCCTCCTCCTCGAAATGGAGGGTGAAGCAGGTGACAACCTCCAACTTCCAAGAGTCCCTGCAAGAGATAAAGACGCACATCTCCAACTCCGACTTTGTCGCCATTTCCATGGGAAAAACGGGCTCTCCCTCCGCGCCGTCGTGGCTCCGCCCTCTACCCTTCGACACCGCCCAGACTGCCTACTCCAAGGCCCGCCGCGCCGCCCAGAGATTCCAGCTCCTCCACTTCGCCGTCTGCCCCTTCTCCGTCTCCCGCTCCGACAAACTCCTCGCTCACCCGTATAATTTCATGTTGTTTCCAAGAGATGAAATGAAGATGGGGATGCCCACTTACAGCTTTTCGTGCCAGACTTCGCTACTTGCCTCCATGGCTCGCCAGGGGTTTGATTTCAATGCTTGCGTCTACAATGGCATATCATATCTATCCAGAGCACAAGAGTCAGCAGCTAGAATTCGTCTTGGGACTGCTCTCCCTTCTCTTCGTGTGATGAAATCTTCTTCACCCTCTACTGTTGCTGATACAGTGTTTGTTGAGAGGATTAGATCAAAGGTTAAATATTGGAGAGAGTCATGTAAAAGCTCCGACACAAACAAAAGCAGAGATGAAGAACTTGTCAACTCCCTTAGGAATATTGTCCTGGGCAATGAACAGTTCAGATCAAGACCTTGCATGACTGTAGATGTTTGCAGTGAACGTCAAGTGCAACTTATTCTGGAGATGGTGTTAGACTACTCAGATGATCTTCTTCCTTTGCCAATCCCTACTAAGAGTGGGACCATTCATGCAGTACGAATTGTTTTGGCAAATTCTAAAGAAGATAAGGATTTATTGGAGAGAGAGCTTCGAAATCTTGAAGAGGAGGAAAGCAAGAAAATTCGTGGATTCCGAGAGGTGATCGATTTGATTTCTGCTTCACAGAAACCTGTTATCTCCCACAATTGCCTTAATGATTGTACACTAATTCATTCAAAATTCATTGCTCCACTTCCGCCTGAGATAGATGAATTTGTGAGCTCCTTGTGCTCGGTTTTCCCTGAGGTGCTTGACATAAATTATTTGATGAAGAAACATGGAACCATGAGAAAAGTGACCAACATTCCGAGTGCTATATCCTACTTGAATAATCATTTTTTTGCACCAGTTGATTTGGAAATTCCTGACCAAGCTACAGTAAAAGAAGGCAAGATTCACGGACTTACTGCATTAAGGCTATCCTATTTATTTATGAAGCTTTGCTCTATATTGAAAATTTCCCCAAATGTTACTGAATCTGGCAACAAGCATTTGGCCCCCGAGCTTGAAGACTTCACCAATGTATTCCATCCATTCTCAACCCCTATCCAAGATTCATTTAATGGTGGGGATGTCGGCATGTGGACCAATAATACAAAAAAAGTCAGTTGTGAGCATTTGGTTTTCTTATGGGGATTCAAAATTGGTATCACAGCTGGCATGCTGAAGAGTTTACTTCGTTCTTCCCATGATATCTTTTCACGAGAGTTTGATGTTAAATTGGTGGACAAGAGTTGTGCCATTGTTGTTTTCTGGCAATCTGGGGTATCAAAAAGATTTCTAGACATATTGAATAGTGAAGAAATAAGAGGAGACTTAAAGGAGTTAGTGTCAGATGGCATGAGGGTAACCAGTTATGAGACCTACAACACAATATGTAGGTTAGGTTTGTGGGAGATGGATCTTGCAGAATCATTAGAAAGAGCCTTGGAAAGTTCTTGCTGTGATATTGAGAGTAATTGTGAGAGAAAATCTTCTGAGATTCATTGGTATAATGACAATGTAATTAACTTGGATGATCTTTAA
>Glyma08g45725.1 sequence type=predicted peptide gene model=Glyma08g45725 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAWVFELRSRSLCTSSSSKWRVKQVTTSNFQESLQEIKTHISNSDFVAISMGKTGSPSAPSWLRPLPFDTAQTAYSKARRAAQRFQLLHFAVCPFSVSRSDKLLAHPYNFMLFPRDEMKMGMPTYSFSCQTSLLASMARQGFDFNACVYNGISYLSRAQESAARIRLGTALPSLRVMKSSSPSTVADTVFVERIRSKVKYWRESCKSSDTNKSRDEELVNSLRNIVLGNEQFRSRPCMTVDVCSERQVQLILEMVLDYSDDLLPLPIPTKSGTIHAVRIVLANSKEDKDLLERELRNLEEEESKKIRGFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPPEIDEFVSSLCSVFPEVLDINYLMKKHGTMRKVTNIPSAISYLNNHFFAPVDLEIPDQATVKEGKIHGLTALRLSYLFMKLCSILKISPNVTESGNKHLAPELEDFTNVFHPFSTPIQDSFNGGDVGMWTNNTKKVSCEHLVFLWGFKIGITAGMLKSLLRSSHDIFSREFDVKLVDKSCAIVVFWQSGVSKRFLDILNSEEIRGDLKELVSDGMRVTSYETYNTICRLGLWEMDLAESLERALESSCCDIESNCERKSSEIHWYNDNVINLDDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
