SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60870 | AT | Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein | chr5:24485788-24487771 REVERSE LENGTH=445 | SoyBase | E_val: 0 | ISS |
| GO:0008380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing | SoyBase | N/A | ISS |
| GO:0032981 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial respiratory chain complex I assembly | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0008536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding | SoyBase | N/A | ISS |
| PTHR22870 | Panther | REGULATOR OF CHROMOSOME CONDENSATION | JGI | ISS | |
| PTHR22870:SF62 | Panther | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY | JGI | ISS | |
| PF00415 | PFAM | Regulator of chromosome condensation (RCC1) repeat | JGI | ISS | |
| UniRef100_A2Q2N3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II n=1 Tax=Medicago truncatula RepID=A2Q2N3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KYX5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYX5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g45650 not represented in the dataset |
Glyma08g45650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g342500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g45650.1 sequence type=CDS gene model=Glyma08g45650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGATGCCACTCCTCCGCCACCGCCTAGCCACTCTCACTCACCGCTTACGCCACTCCTCCGCCGCCGCCGCCACCCCGAAACCCCCCATCCTCTACACCGCCGACACAACCGCCGACGCCACCGCCACCCTCCAAGTCCTCTCGTGGGGCAAAGGCGCCTCCGGCCAGCTCGGCGGAGGCGTCGAGGAGACCCGCCTCTACCCTTCTCCGGTTGCCAACCTCGCCGTCCCCAAATCCTCCTTCGCCCTCTCCCAAACCCCTGGCCGCCGCCGCCTCCTCCCAAGCCCACCGAAGCGGGCCCTTGAAGTGGGCCTCTCTTGTGGGCTTTTCCACTCCTCCCTGATCGTCGATGGGGCCCTCTGGATTTGGGGCAAAGGCGACGGCGGAAGATTGGGCTTCGGCCACGAAAACCCCTTGTTCGTTCCCACACTGAACCCTCACCTCGATAACCTCCTCTCCGTCGCACTCGGCGGCTTGCATTCCGTCGCGCTTACCTCGGACGGCGAGGTCTTTACGTGGGGTTATGGTGGTTTTGGTGCACTTGGGCACTCAGTATATCATAGAGAGCTATTTCCTAGGTTGGTAAAAGGCTCCTGGGAGGGAACTATAAAACACATTGCTACCAGTGGAACACATACTGCAGCAATCACAGAATCAGGGGAGCTTTATATCTGGGGTCGAGATGAAGGGGATGGCCGATTGGGCCTTGGTCCTGGTCGGGGCCCAGATCATGCAGGTGGACTTAGTATCCCTTCCAAAGTAAAAGAGTTACCTTACCCTATTGCTGCTGTATCCTGTGGGGGATTTTTCACAATGGCATTGACAGTGGATGGACAATTATGGAACTGGGGAGCCAATTCCAACTATGAACTTGGGAGAGGTGATAAGATTGGTGGTTGGAAACCAAGACCAGTACCCAGCCTTGAGAATGTTAAAATAATTCAATTAGCAAGTGGTGGATATCACTCCCTTGCATTAACAGATGATGGCAAAGTGCTCTCATGGGGCCATGGTGGACAAGGTCAGTTGGGCCATGGATCTATCCAGAATCAGAAGATACCAGCAGTAGTTGAGGCTTTAGCTCATGAGAATATTATATATATTTCTTGTGGGGGTTCCTCATCAGCAGCTGTGACGGATAATGGAAAGTTGTACATGTGGGGAAATGCTAATGATTCTCAATTGGGAATTCCTGGGCTACCACCGGTTCAATCATGCCCTGTTGAAGTCAACTTTTTAATGGAAGATGATGGATTAGGACCTCACAAAGTTTTATCAGTTGCAATTGGTGCATCACATGCCATGTGTTTAGCTTTGAGGGAGAGTAGTTGA
>Glyma08g45650.1 sequence type=predicted peptide gene model=Glyma08g45650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVMPLLRHRLATLTHRLRHSSAAAATPKPPILYTADTTADATATLQVLSWGKGASGQLGGGVEETRLYPSPVANLAVPKSSFALSQTPGRRRLLPSPPKRALEVGLSCGLFHSSLIVDGALWIWGKGDGGRLGFGHENPLFVPTLNPHLDNLLSVALGGLHSVALTSDGEVFTWGYGGFGALGHSVYHRELFPRLVKGSWEGTIKHIATSGTHTAAITESGELYIWGRDEGDGRLGLGPGRGPDHAGGLSIPSKVKELPYPIAAVSCGGFFTMALTVDGQLWNWGANSNYELGRGDKIGGWKPRPVPSLENVKIIQLASGGYHSLALTDDGKVLSWGHGGQGQLGHGSIQNQKIPAVVEALAHENIIYISCGGSSSAAVTDNGKLYMWGNANDSQLGIPGLPPVQSCPVEVNFLMEDDGLGPHKVLSVAIGASHAMCLALRESS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
