Glyma08g45490 - SoyBase

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Report for Sequence Feature Glyma08g45490

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44863255
stop:	44864279
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73260	AT	Annotation by Michelle Graham. TAIR10: kunitz trypsin inhibitor 1 \| chr1:27547410-27548057 REVERSE LENGTH=215	SoyBase	E_val: 1.00E-16	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0012501	GO-bp	Annotation by Michelle Graham. GO Biological Process: programmed cell death	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004866	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase inhibitor activity	SoyBase	N/A	ISS
PF00197	PFAM	Trypsin and protease inhibitor	JGI		ISS
UniRef100_C6SVL0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVL0_SOYBN	SoyBase	E_val: 1.00E-143	ISS
UniRef100_Q8W3K5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mcp20 n=1 Tax=Matricaria chamomilla RepID=Q8W3K5_9ASTR	SoyBase	E_val: 6.00E-45	ISS

Expression Patterns of Glyma08g45490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g341100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45490

Limit To All Plant Sequences

>Glyma08g45490.1   sequence type=CDS   gene model=Glyma08g45490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATACTGCGTTGTTCACTATCTTTCTACTCCTTGCTTTCACCTCATACCTACCTTCAGCCACCGCTGCTAGTGTGTACGATACGGATGGTAATATTCTTCAAAAGGGTCGCACATATTTTGTGTTGGCAGCTACAAGAGGAAACGGCGGTGGAATAGAATTTGCCGCAACTGGAAACGACACTTGCCCTCTAACTGTCGTGCAATCTCCCAGTGGCGACTCTATTGGGTTTCCAATAAGGTTTTCATATCCATTTATAGAAACGCTTGATGATATCCTTGAAGGCTTTGGTTTGGAGATTCGTTTCGCTTATCGACCGCCGTGTAGCCCCAGTTCTATAGCCACTACTAAGTGGACTATCGTCAATGATGCTGTTAAGCTTACTAAAACTTCATCATCGATAATACCCGGTTTTTTTTATATTTGGGGGGCTTCACCTAACTCTAAGGACTATAAGCTTGAGTTCTGTGATCTTGACAATATCAAATGTGGGGATGTTGGGATTCATACCGATGATGATGGGAGCAGGCGTTTGGTGATCACTCAGAACGATCCATTACTAGTTCACTTTCAGAATACTAGATCATCATCTGCATGA

Predicted protein sequences of Glyma08g45490

Limit To All Plant Sequences

>Glyma08g45490.1   sequence type=predicted peptide   gene model=Glyma08g45490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNTALFTIFLLLAFTSYLPSATAASVYDTDGNILQKGRTYFVLAATRGNGGGIEFAATGNDTCPLTVVQSPSGDSIGFPIRFSYPFIETLDDILEGFGLEIRFAYRPPCSPSSIATTKWTIVNDAVKLTKTSSSIIPGFFYIWGASPNSKDYKLEFCDLDNIKCGDVGIHTDDDGSRRLVITQNDPLLVHFQNTRSSSA*

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