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Report for Sequence Feature Glyma08g45471

Feature Type:gene_model
Chromosome:Gm08
Start:44835461
stop:44845005
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g45471
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02170AT Annotation by Michelle Graham. TAIR10: metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367 SoyBaseE_val: 0ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0043068GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of programmed cell death SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0004197GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1546 KOG Metacaspase involved in regulation of apoptosis JGI ISS
PF00656PFAM Caspase domain JGI ISS
PF06943PFAM LSD1 zinc finger JGI ISS
UniRef100_B9SKF8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Caspase, putative n=1 Tax=Ricinus communis RepID=B9SKF8_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KYW2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYW2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g45471
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g45471 not represented in the dataset
Glyma08g45471 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45471 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g340900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g45471
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g45471
>Glyma08g45471.1   sequence type=CDS   gene model=Glyma08g45471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAGCAACATGCTGGTCAACTGCTCCAACTGCCGCACCCCTCTGCAGCTGCCACCTGGCGCGGGATCCATCCGCTGCGCCCTCTGCCGCGCTGTCACTCTCATCGGCGATCCACGCGCCCTCCCTTCGCAGCCACCGGCCTCCACCCACGCGCCTCCTCCTCCGTCCTCTCCCTACAGCCACGCGCCGCCCCCGCCCAACCCCCACGGCCGCAAGAAGGCCGTCATCGTCGGCATCTCCTACCGCTTCTCGCGACACGAGCTCAAGGGATGCATCAACGACGCCAAGTGCATGAAGTACCTCCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACCGAAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGATGGCAATGTATTGGCTTGCACAAGGATGTCAACCTGGAGACTCCCTGGTTTTTCATTATTCTGGTCATGGATCACAGCAAAGGAACTATAGTGGTGATGAAGCTGATGGATATGATGAAACTCTATGTCCCCTTGATTTTGAAACACAGGGTATGATTGTAGATGATGAGATCAATGCCGCACTTGTTAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGGAGTGGGCAATATGTATGGGAGGACCATCGCCCTAGATCCGGTGTATGGAAGGGATCTAGTGGTGGAGAAGTTATCTGCTTCAGTGGATGCGACGATCATCAAACTTCAGCTGATACATCTGCTCTATCAAAAATTACATCGACTGGGGCAATGACATTTTGCTTCATCCAAGCCATAGAGCGTGGCCATGGGGCTACCTATGGCAGCATTCTTACTGCAATGCGCACTTCCATCAGAAATGTTGGCGGCGGCGGCGGCGGTACCGGGGGTGGTGATGTGGTAACATCCCTTCTCTCCATGCTTTTGACTGGAGGGAGTCTCAGCGGTGTCGGTGGACTGGGACAGGAACCACAGTTAACAGCTTGCGAAGCATTTGATGTGCATAGAAAACCTTTTTCATTATGA
Predicted protein sequences of Glyma08g45471
>Glyma08g45471.1   sequence type=predicted peptide   gene model=Glyma08g45471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSNMLVNCSNCRTPLQLPPGAGSIRCALCRAVTLIGDPRALPSQPPASTHAPPPPSSPYSHAPPPPNPHGRKKAVIVGISYRFSRHELKGCINDAKCMKYLLINKFSFPESSIIMLTEEEDPHGPKFPTKHNIRMAMYWLAQGCQPGDSLVFHYSGHGSQQRNYSGDEADGYDETLCPLDFETQGMIVDDEINAALVRPIPHGAKLHALIDACHSGTVLDLPFLCRMNRSGQYVWEDHRPRSGVWKGSSGGEVICFSGCDDHQTSADTSALSKITSTGAMTFCFIQAIERGHGATYGSILTAMRTSIRNVGGGGGGTGGGDVVTSLLSMLLTGGSLSGVGGLGQEPQLTACEAFDVHRKPFSL*






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