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Report for Sequence Feature Glyma08g45461

Feature Type:gene_model
Chromosome:Gm08
Start:44834394
stop:44838797
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g45461
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17080AT Annotation by Michelle Graham. TAIR10: Histone H3 K4-specific methyltransferase SET7/9 family protein | chr4:9601570-9603815 FORWARD LENGTH=513 SoyBaseE_val: 8.00E-163ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR23084Panther PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED JGI ISS
PF02493PFAM MORN repeat JGI ISS
UniRef100_B9SKF6UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1-phosphatidylinositol-4-phosphate 5-kinase, putative n=1 Tax=Ricinus communis RepID=B9SKF6_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KYW1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYW1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g45461
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g45461 not represented in the dataset
Glyma08g45461 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45461 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g340800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g45461
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g45461
>Glyma08g45461.1   sequence type=CDS   gene model=Glyma08g45461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCAGAAGAAATCAGAGGTTCAGATCGGAAAAGAAAGCGTAGGCGTCTCTTCCGATTTCAATCCGCAATTCCAAAAACACCCCTACCACCGCCACCAGCAATTCTACCCCCAAATCGAAATCGATATATCTCCCCAATCCCCACCGCAGCCAACCACACCTCCTCCTCCTCCTCCTCCCCCTTCACTCTCCAAACAGAAACACATCTTCAAGCCCCAGAACGCCGCCTTCTTCTCCGTATCCGTCGCCGCGAAGAGCGCCGCGTTCCGCGCGCTGCGGCGCGTGAGGCGCCAGCGCGCGTTGCTCCTACTCGCGGTCCCCTTCCTCTACCTCTACTTCCTCATCTCGCGCTCCTTCCTCCTCGACCTCCTCTCCGCCATCGCCTTCTCCGCCGCGCTCGTGTTTTCTCTTAACCTCGCTTTCCCTTTGCCTCTCCGTTCGGTTCGCCTCAAGGCGGCGAAGAATTCCGCCTCCCGTCCCGCGCCCGCTCTTCCGGTGTTCTGGACGATCGGGTCGAGGCCGAAGACGGAGAAGCGCGCCGCGGCGTCCGGGTGCTGGGTGCAGGTGTTTGGAAACGGCGACGTTTACGAGGGGGAGTTTCATCGGGGGAAGTGTTCGGGGAGCGGGGTGTATTACTATAGCAGGAGTGGGAGGTACGAGGGGGATTGGGTGGACGGGAAGTACGATGGGTATGGGGTGGAGACGTGGGCGCGTGGGAGCCGCTACCGTGGGTGTTACTGGCAGGGGCTGAGGCACGGGTTTGGGGTCTATAGGTTTTACACCGGGGATGTCTATGCTGGAGAGTGGTCTAATGGGCAGAGCCATGGGTCTGGGGTTCACACTTGCGAGGATGGGAGTCGCTATGTTGGGGAGTTTAAGTGGGGGGTCAAGCATGGCCTTGGCCATTACCATTTCAGAAATGGAGATACATACGCGGGTGAATACTTTGCAGACAAGATGCATGGTTTTGGCATATATCATTTTGCGAATGGCCATCGTTATGAAGGAGCCTGGCATGAAGGCAGAAGGCAAGGACTTGGAATGTATACATTTAGAAATGGTGAAACCCAATCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACGGAACACCACTTCTCCAGTTTCTCCTGTTGGTGTCTATTATTCCAAAGTACTCAATGCAGTGCAGGAAGCAAGACGAGCTGCCGAGAAAGCCTATGATATGGCTAAGGTAGATGAAGGGGTGAACAGAGCTGTAGCAGCTTCTAATAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTAAAAGCTGTACAAAAACAGAATTATCATGTTAGCAGTGAAAGCTTCTCAATTCCTGTTGTGTAA
Predicted protein sequences of Glyma08g45461
>Glyma08g45461.1   sequence type=predicted peptide   gene model=Glyma08g45461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHQKKSEVQIGKESVGVSSDFNPQFQKHPYHRHQQFYPQIEIDISPQSPPQPTTPPPPPPPPSLSKQKHIFKPQNAAFFSVSVAAKSAAFRALRRVRRQRALLLLAVPFLYLYFLISRSFLLDLLSAIAFSAALVFSLNLAFPLPLRSVRLKAAKNSASRPAPALPVFWTIGSRPKTEKRAAASGCWVQVFGNGDVYEGEFHRGKCSGSGVYYYSRSGRYEGDWVDGKYDGYGVETWARGSRYRGCYWQGLRHGFGVYRFYTGDVYAGEWSNGQSHGSGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGIYHFANGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGVLDIPSTRNTTSPVSPVGVYYSKVLNAVQEARRAAEKAYDMAKVDEGVNRAVAASNRAANAARVAAVKAVQKQNYHVSSESFSIPVV*






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