SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10090 | AT | Annotation by Michelle Graham. TAIR10: elongator protein 6 | chr4:6305455-6307286 FORWARD LENGTH=262 | SoyBase | E_val: 1.00E-89 | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0031538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of anthocyanin metabolic process | SoyBase | N/A | ISS |
| GO:2000024 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of leaf development | SoyBase | N/A | ISS |
| GO:0033588 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Elongator holoenzyme complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG4723 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR16184 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR16184:SF1 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF09807 | PFAM | Uncharacterized conserved protein (DUF2348) | JGI | ISS | |
| UniRef100_C6TH84 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TH84_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8L9Y2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elongator complex protein 6 n=1 Tax=Arabidopsis thaliana RepID=ELP6_ARATH | SoyBase | E_val: 5.00E-87 | ISS |
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Glyma08g45450 not represented in the dataset |
Glyma08g45450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g340700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g45450.1 sequence type=CDS gene model=Glyma08g45450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAGAAAAATTGGAACCTTCTCGATGAAGCTTTAGGGCTTAACAACAACAATGCGAAGCCATGGCCTCTGTGTGGTCGCTTCGTGCTTGTGGAAGATTGTGTTGACACAAGCGCCGCTTTCGTTCTTCACCAAATCCTCAAACGCTCCTTCTCTTCTCACCCTTCTTCCGCCGTCGTCTTCCTCGCTTTCTCTCACCCTTTTTCCCACTATGATCGCGTCCTCAGAAAGCTTGGTTGCAACTTAGCTGCTCAAAGAGATAATGGAAGATTGTTTTTCCTTGACATGCTTATGTTGCAGTGTCCAGATGAAGGAAAAGCCAATCATGATGGGCTTGCTTCTGTATTTGAGCAAATTGAAAGAGTGATCACTGCATTACATCAAGACAAGAAATTCATCTCTATCATGATAGATGATATATCCTTTCTTGAAGTTGCTGCTAATGGCTCTTCCAATGATGTTTTAAACTTGGTGCATTATTGCCATACGTTAACATCTGATTCAGAATATGGTTGTGCATTTATTGCACTCGACCATAAGGACATTTATTTGAACGGAGACAGGACTGCTGTTATGTTAGAGATGGAGTTCCTTGCTGACATTTTGGTCAAGGCTGAACCATTGGCCACTGGTTTGGCAAAAGATGTGCATGGGCAGTTGATGGTGTTAGATAAGGAAACACAGCATCGACATGGAGTTTCAACCGTTAAGACTCACAATTTTCACTTCAAGATCAAGGAAAATGGCATTGAGTGCTTTTATCCGGGAACAAAAATTTAA
>Glyma08g45450.1 sequence type=predicted peptide gene model=Glyma08g45450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQKNWNLLDEALGLNNNNAKPWPLCGRFVLVEDCVDTSAAFVLHQILKRSFSSHPSSAVVFLAFSHPFSHYDRVLRKLGCNLAAQRDNGRLFFLDMLMLQCPDEGKANHDGLASVFEQIERVITALHQDKKFISIMIDDISFLEVAANGSSNDVLNLVHYCHTLTSDSEYGCAFIALDHKDIYLNGDRTAVMLEMEFLADILVKAEPLATGLAKDVHGQLMVLDKETQHRHGVSTVKTHNFHFKIKENGIECFYPGTKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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