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Report for Sequence Feature Glyma08g45410

Feature Type:gene_model
Chromosome:Gm08
Start:44805019
stop:44807032
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g45410
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24110AT Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr3:8704429-8705413 REVERSE LENGTH=229 SoyBaseE_val: 2.00E-71ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF140Panther JGI ISS
PF10591PFAM Secreted protein acidic and rich in cysteine Ca binding region JGI ISS
UniRef100_I1KYV7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYV7_SOYBN SoyBaseE_val: 1.00E-156ISS
UniRef100_Q9LRN6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Probable calcium-binding protein CML22 n=1 Tax=Arabidopsis thaliana RepID=CML22_ARATH SoyBaseE_val: 1.00E-68ISS

Expression Patterns of Glyma08g45410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g45410 not represented in the dataset
Glyma08g45410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45410 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g340400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g45410
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g45410
>Glyma08g45410.1   sequence type=CDS   gene model=Glyma08g45410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATGTATTGGTATCTCAAGCAAGAAAATGTGCTTGGATGACAAGCTTGAAAGGAAAATAGCTGAAATGAGAAGATATAAATTTGGACAAAGCAAATTGAAATCAGTTGATAGTGTAGTTATGCTGTTCCCTATGTTCAAGGAGAGACTGAAAACATTAAGAGGAATGTTTGAACAGTATGATGAGGATTCTAACGGATCTATAGAACCCAACGAACTAAAAAAGTTCTTAGAACATCTTGAACTTCATCTTAAAGAGCAAGAGATTGAGCATCTTTTTCAGTACTGTGATCTTGATGGAAGCAAGGGCATACAGTTCAATGAGTTTATAGTTCTTCTATGCCTCATCCATCTCCTAGCAGAACCTTCATCCTCTGATATTTCATCCAAAGCTGAGTTAGCACAGGTTGGAGAAATTTTTAATACCATAGTTGAGGTCTTTGTATTTTTTGATCAAAATGGTGATGGAAAGCTTAACCAAAAGGACATGGTCAGGACACTGAATGAGACTAATCCAAGGGAAAGGTCACCGGCGCGTATCTCTAAACACCGATTTCAAGAAATGGACTGGGACAAGAATGGACAGGTCACGTTCAGAGAGTTCCTCTTTGGTTTCATTAATTGGGTTGGAATTGGTGATGATGAATAG
Predicted protein sequences of Glyma08g45410
>Glyma08g45410.1   sequence type=predicted peptide   gene model=Glyma08g45410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCIGISSKKMCLDDKLERKIAEMRRYKFGQSKLKSVDSVVMLFPMFKERLKTLRGMFEQYDEDSNGSIEPNELKKFLEHLELHLKEQEIEHLFQYCDLDGSKGIQFNEFIVLLCLIHLLAEPSSSDISSKAELAQVGEIFNTIVEVFVFFDQNGDGKLNQKDMVRTLNETNPRERSPARISKHRFQEMDWDKNGQVTFREFLFGFINWVGIGDDE*






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