Glyma08g45400 - SoyBase

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Report for Sequence Feature Glyma08g45400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44802006
stop:	44804990
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32800	AT	Annotation by Michelle Graham. TAIR10: protein kinase family protein \| chr2:13916478-13919033 FORWARD LENGTH=851	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF536	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_O48837	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor like protein kinase S.2 n=1 Tax=Arabidopsis thaliana RepID=LRKS2_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339114	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339114 related cluster n=1 Tax=unknown RepID=UPI0002339114	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g340300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45400

Limit To All Plant Sequences

>Glyma08g45400.2   sequence type=CDS   gene model=Glyma08g45400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAATACCTCCTTTTTTTTTTCTCTCACAAACCATTCACCAAAACCACAACCATGCATTTCAATCGCCTCTGCATAGTTTTACCACCAAATTCTGGTGAAATGGTAGTGCCACTTGAAAAGGGTGTCCTACAAGAAGAACCCTTTCAAACACCAAAGAAGCAACAAGTTGAGGCCAAGAAGCCTCATAGGGCTTGTGGTGGACAAGTTCTTGATTTGCTTCGTGATTCTTTTACCAAGTTATATGATTCAAGGTGGTGGAGAATTTGCCAACATGGAGAACACAAAGAGAAGAACAACTCTGGTGTGTTTTTTCATGACATGGATGGTGTGCAAGTTTCTGTCAACATTGGCAGGGACAACCCCAGAATTTTCAGCTATGCTGAGTTGTTCATAGGGTCCAATGGTTTCAGTGAAGACCAAGTTCTAGGGAGTGGAGGGTTTGGAAGAGTATACAAGGCTGTTTTGCCAAGTGATGGAACTGAGGTTGCTGTGAAGTGCTGTTTAGCAGAGAAAGGGAAGCAGTTTGAGAAGAGTTTTGCTGCTGAGTTAACAGCTGTGGCAGATCTTCGCCACAAGAATCTTGTGAGGCTGAGGGGTTGGTGTGTGAATGAGGATCAGTTGCATCTTGTTTATGACTACATGCCTAACCGAAGCCTCGACCGCGTACTATTTCGAAGGCATGAGAATTCGAAGGCTGAGCCTCTTCAATGGGGACAAAGAGGGAAGATTTTGAAAGGTTTGGCAGCAGCATTGTACTATCTCCATGAGCAGCTAGAGACTCAAATCATTCATAGGGATGTTAAGACCAGCAATGTGATGCTTGATTCGCATTACAATGCTCGGTTGGGCGATTTTGGCATGGCAAGGTGGCTAGAACATGAGCTTGAGTATGAGTACAAGTATAACAATAGGAAAACAATCGCAACCAAAAGTGGCCACTTCAGGTTGGGAGAAACATCAAGAATTGGTGGCACAATTGGGTATCTTCCACCTGAAAGCTTGCAGAAACCAAGCAATGCTACTTCCAAATCTGATGTCTTTAGCTTTGGGATTGTTGTGCTAGAGGTGGTGTCTGGAAGGAGAGCAATTGACCTAACACACCCTGATGAACAAATCATTTTGCTTGATTGGATTAGAAGGCTTTCTGATGAAGGGAAGCTTCTGGAAGCGGCTGATTCTCGGTTACTGGATGGATCATACAAGCTTTCAGAGATGCAGCATTTCATTCACATAGGCCTCCTATGCACACTCCATGACCCTCAATTGAGGCCAAGCATGAAATGGGTAGTGGAAGCACTTTCTGACATTTCTTTCAAATTACCATCACTCCCTTCTTTCCTCTCCCACCCTTTATACATCTCTCTGTCTTCTCCTTCTAATACTAATAATAGTCCTAGCAGCACAAGTGTCACTAGCTCCTCCACCACAGATAATGCTAGCAGCATAATCACCAACCATACTTCATCAAACTATGTCACAGCTGCAGGTGAAACTGTGTATGTCACTGCTGAGTACAAAAACAGTGAAATCATCTCTTCTAAGAGCATGAGCCACCACCAGCAACCATTTCCTGTGGTTGAAACTCCAAGGGAAATATCATTCAAGGAGATTGTTTCTGCTACAGATAACTTTTCTGATTCGAGAAGGGTGGCTGAGCTAGACTTTGGAACTGCTTACCATGGCATCCTTGATGACAAGTGCCATGTTTTGGTGAAACGCCTTGGGCTGAAAACGTGTCCTGCATTGCGTGATAGATTCTCCAACGAACTTCGGAATCTTGGAAGGCTTCGCCATAGGAATTTGGTTCAGCTTCGAGGATGGTGCACCGAGCAAGGAGAGATGCTTGTCTTATATGATTACTCAGCAAGTAGAATTCTCAGCCAACGGCTTCAGCATCATAGCAATGGAAGTAGAAGGGGGAGTTCTGTCCTCCAATGGCACCACAGGTATAACATAGTGAAAGCACTGGCCTCTGCAGTTCTCTATCTACATGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACCTCTTCAGCTGTCATTCTTGAACCAGATATGAATCCAAGACTCACCTCTTTTGCTCTAGCCGAATTTTTGTCAAGGAATGAGAATGGTCATCATGTAGTCATTGATACTAAAAAGTCGGTTCGTGGGATATTTGGCTACATGGCACCGGAATATGTTGAATCAGGTGAAGCAACCACTGAGGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTTAGCGGACAGATGGCAGTGGATTTCAGGCAGCCAGAGGTGCTTTTGGTTAAGAAGGTTCATGAATTTGAGATGAGAAAAAGGCCATTGAAGGAATTAGCTGATATAAGACTCAATGGAGAGTACAATGACCAAGAATTGATGAGATTGGTAAGGTTAGGAATAGCTTGCACCAGATGTAACCCGCAGTTAAGACCAAGCATGAGACAAATTGTAAGCATCCTTGATGGCAATGACAAATTACTTATCCAGAATAACAAGGAGAGCAGAGAAGAATGGAGGGAAAGAAATGATTGTTCTTTGTCAATGATTAAGAGAATTCAAGCTCTAGGAATACAGTAA

Predicted protein sequences of Glyma08g45400

Limit To All Plant Sequences

>Glyma08g45400.2   sequence type=predicted peptide   gene model=Glyma08g45400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKYLLFFFSHKPFTKTTTMHFNRLCIVLPPNSGEMVVPLEKGVLQEEPFQTPKKQQVEAKKPHRACGGQVLDLLRDSFTKLYDSRWWRICQHGEHKEKNNSGVFFHDMDGVQVSVNIGRDNPRIFSYAELFIGSNGFSEDQVLGSGGFGRVYKAVLPSDGTEVAVKCCLAEKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVNEDQLHLVYDYMPNRSLDRVLFRRHENSKAEPLQWGQRGKILKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGMARWLEHELEYEYKYNNRKTIATKSGHFRLGETSRIGGTIGYLPPESLQKPSNATSKSDVFSFGIVVLEVVSGRRAIDLTHPDEQIILLDWIRRLSDEGKLLEAADSRLLDGSYKLSEMQHFIHIGLLCTLHDPQLRPSMKWVVEALSDISFKLPSLPSFLSHPLYISLSSPSNTNNSPSSTSVTSSSTTDNASSIITNHTSSNYVTAAGETVYVTAEYKNSEIISSKSMSHHQQPFPVVETPREISFKEIVSATDNFSDSRRVAELDFGTAYHGILDDKCHVLVKRLGLKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVLYDYSASRILSQRLQHHSNGSRRGSSVLQWHHRYNIVKALASAVLYLHEEWDEQVIHRNITSSAVILEPDMNPRLTSFALAEFLSRNENGHHVVIDTKKSVRGIFGYMAPEYVESGEATTEADVYSFGVVVLEVVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADIRLNGEYNDQELMRLVRLGIACTRCNPQLRPSMRQIVSILDGNDKLLIQNNKESREEWRERNDCSLSMIKRIQALGIQ*

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