Glyma08g45370 - SoyBase

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Report for Sequence Feature Glyma08g45370

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44773378
stop:	44780559
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80770	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:30355266-30357786 FORWARD LENGTH=451	SoyBase	E_val: 0	ISS
GO:0015684	GO-bp	Annotation by Michelle Graham. GO Biological Process: ferrous iron transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0015093	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferrous iron transmembrane transporter activity	SoyBase	N/A	ISS
PTHR11702	Panther	DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED	JGI		ISS
PTHR11702:SF4	Panther	GTP-BINDING PROTEIN YLF2-RELATED	JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
PF02421	PFAM	Ferrous iron transport protein B	JGI		ISS
PF06858	PFAM	Nucleolar GTP-binding protein 1 (NOG1)	JGI		ISS
UniRef100_B9SKH9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKH9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339110	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339110 related cluster n=1 Tax=unknown RepID=UPI0002339110	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g340000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g45370

Limit To All Plant Sequences

>Glyma08g45370.2   sequence type=transcript   gene model=Glyma08g45370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAAATAAAATGTTTAACTAGGAGAATGCAGCATAGGCATCGAACTCAAACATTATCGGTGGACAGAAACACCACTGAACGAGGTTGCTTGCTCCGACGCCGAAATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGAGGACAGGAATAATTTGGAAAAGTTGACTCTGGCTGTCCTTTCGCACCTGCCGACAGCAGTTTTGTATGTCCATGACCTTTCTGGGGAGTGTGGCACCTCACCTTCTGATCAGTTTTCAATATACAAAGAACTCAGAGAAAGGTTCAATGGACATTTATGGCTTGATGTCGTGTCAAAATCTGATTTGTTGAAGACGTCTCCTGTAGTCTATGCAACAGACGAGCCTCATCCCTCCCAACTCGAGCTTGAAAAGTACCGGAAATCAGGTCCCAATGGAGCTATTAACGTATCTGTCAAAACACAAGGAGGGCTACATGAGCTAAAGCAGAGAGTGCATGAACTGCTTAATTTGCAGATGGCCAAGATAAATGATATAAGCAACAACCAGGAGAAGTGAAAGGTGTCACTCCACTAAGGGTTGATATCAAACTTGTGAAGAAACTTCCTGATCAAATAGGGAAGTCTGAAACCTTCATGAGCCAGAAGCTTATCTTTGTAAAATATGTTAGCAGCTCTGTGGCCAGCCTCCAAGCAGGAAAAGAAGCAAAGGCTTCTTAATTAATACCTTCAAGCAATTAAGCATTGGTAGGTTGAGCATACGAAACTTCCAGAAAATGTTCAGTCACTTTTAGCTTTGTTGAGGAGATCATGTTCCACCCGTATTGGGCCTTCTTGAAGAAACAATAAATGCTTGTTTATCAACTTTTCAGTTCATTGATTGTCATTGGCTTCAATCATGTGTCTTAACTTCTTAAGTCCATTGTCAGAAGTCTTCATAAATTGGTTAATGTTAAGATCTGAATTGATATTGAGATATAATGTATTGATATATTAGATATGTTCATAATATCTAGTGTTAATTCTTATTTATACTAA

Coding sequences of Glyma08g45370

Limit To All Plant Sequences

>Glyma08g45370.1   sequence type=CDS   gene model=Glyma08g45370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGGAATAATTTGGAAAAGTTGA

>Glyma08g45370.2   sequence type=CDS   gene model=Glyma08g45370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGAGGACAGGAATAATTTGGAAAAGTTGACTCTGGCTGTCCTTTCGCACCTGCCGACAGCAGTTTTGTATGTCCATGACCTTTCTGGGGAGTGTGGCACCTCACCTTCTGATCAGTTTTCAATATACAAAGAACTCAGAGAAAGGTTCAATGGACATTTATGGCTTGATGTCGTGTCAAAATCTGATTTGTTGAAGACGTCTCCTGTAGTCTATGCAACAGACGAGCCTCATCCCTCCCAACTCGAGCTTGAAAAGTACCGGAAATCAGGTCCCAATGGAGCTATTAACGTATCTGTCAAAACACAAGGAGGGCTACATGAGCTAAAGCAGAGAGTGCATGAACTGCTTAATTTGCAGATGGCCAAGATAAATGATATAAGCAACAACCAGGAGAAGTGA

Predicted protein sequences of Glyma08g45370

Limit To All Plant Sequences

>Glyma08g45370.1   sequence type=predicted peptide   gene model=Glyma08g45370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKAPSSLFLKGHVLPSSIFLLRNSKGTPNVKMHPIWCLCKAIQTNSYEISNGSYHPTVQQTTEKKTMEKLSRKVESIGAFQKLPIVMPSIDIIGSALRKARKVSPTKGIANIAKREKNKGAKQLDALMKEIAVPLRTYVENFPNKMHLHPYERSLIELTLGDGYYEMVLRKVDSLRKRVVSVGKEHASLCAKSSSKREAEERLNEGLKKIEEIFAQERKVVDDLLGIAKTLRAMPVINLETPTLCLVGAPNVGKSSLVHVLSTGKPEICNYPFTTRGILMGHIILNFQKFQVTDTPGLLRRHDGIIWKS*

>Glyma08g45370.2   sequence type=predicted peptide   gene model=Glyma08g45370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKAPSSLFLKGHVLPSSIFLLRNSKGTPNVKMHPIWCLCKAIQTNSYEISNGSYHPTVQQTTEKKTMEKLSRKVESIGAFQKLPIVMPSIDIIGSALRKARKVSPTKGIANIAKREKNKGAKQLDALMKEIAVPLRTYVENFPNKMHLHPYERSLIELTLGDGYYEMVLRKVDSLRKRVVSVGKEHASLCAKSSSKREAEERLNEGLKKIEEIFAQERKVVDDLLGIAKTLRAMPVINLETPTLCLVGAPNVGKSSLVHVLSTGKPEICNYPFTTRGILMGHIILNFQKFQVTDTPGLLRRHDEDRNNLEKLTLAVLSHLPTAVLYVHDLSGECGTSPSDQFSIYKELRERFNGHLWLDVVSKSDLLKTSPVVYATDEPHPSQLELEKYRKSGPNGAINVSVKTQGGLHELKQRVHELLNLQMAKINDISNNQEK*

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