SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80770 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30355266-30357786 FORWARD LENGTH=451 | SoyBase | E_val: 0 | ISS |
| GO:0015684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ferrous iron transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0015093 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ferrous iron transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR11702 | Panther | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR11702:SF4 | Panther | GTP-BINDING PROTEIN YLF2-RELATED | JGI | ISS | |
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| PF02421 | PFAM | Ferrous iron transport protein B | JGI | ISS | |
| PF06858 | PFAM | Nucleolar GTP-binding protein 1 (NOG1) | JGI | ISS | |
| UniRef100_B9SKH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKH9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339110 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339110 related cluster n=1 Tax=unknown RepID=UPI0002339110 | SoyBase | E_val: 0 | ISS |
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Glyma08g45370 not represented in the dataset |
Glyma08g45370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g340000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g45370.2 sequence type=transcript gene model=Glyma08g45370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGAAAATAAAATGTTTAACTAGGAGAATGCAGCATAGGCATCGAACTCAAACATTATCGGTGGACAGAAACACCACTGAACGAGGTTGCTTGCTCCGACGCCGAAATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGAGGACAGGAATAATTTGGAAAAGTTGACTCTGGCTGTCCTTTCGCACCTGCCGACAGCAGTTTTGTATGTCCATGACCTTTCTGGGGAGTGTGGCACCTCACCTTCTGATCAGTTTTCAATATACAAAGAACTCAGAGAAAGGTTCAATGGACATTTATGGCTTGATGTCGTGTCAAAATCTGATTTGTTGAAGACGTCTCCTGTAGTCTATGCAACAGACGAGCCTCATCCCTCCCAACTCGAGCTTGAAAAGTACCGGAAATCAGGTCCCAATGGAGCTATTAACGTATCTGTCAAAACACAAGGAGGGCTACATGAGCTAAAGCAGAGAGTGCATGAACTGCTTAATTTGCAGATGGCCAAGATAAATGATATAAGCAACAACCAGGAGAAGTGAAAGGTGTCACTCCACTAAGGGTTGATATCAAACTTGTGAAGAAACTTCCTGATCAAATAGGGAAGTCTGAAACCTTCATGAGCCAGAAGCTTATCTTTGTAAAATATGTTAGCAGCTCTGTGGCCAGCCTCCAAGCAGGAAAAGAAGCAAAGGCTTCTTAATTAATACCTTCAAGCAATTAAGCATTGGTAGGTTGAGCATACGAAACTTCCAGAAAATGTTCAGTCACTTTTAGCTTTGTTGAGGAGATCATGTTCCACCCGTATTGGGCCTTCTTGAAGAAACAATAAATGCTTGTTTATCAACTTTTCAGTTCATTGATTGTCATTGGCTTCAATCATGTGTCTTAACTTCTTAAGTCCATTGTCAGAAGTCTTCATAAATTGGTTAATGTTAAGATCTGAATTGATATTGAGATATAATGTATTGATATATTAGATATGTTCATAATATCTAGTGTTAATTCTTATTTATACTAA
>Glyma08g45370.1 sequence type=CDS gene model=Glyma08g45370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGGAATAATTTGGAAAAGTTGA >Glyma08g45370.2 sequence type=CDS gene model=Glyma08g45370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGAGGACAGGAATAATTTGGAAAAGTTGACTCTGGCTGTCCTTTCGCACCTGCCGACAGCAGTTTTGTATGTCCATGACCTTTCTGGGGAGTGTGGCACCTCACCTTCTGATCAGTTTTCAATATACAAAGAACTCAGAGAAAGGTTCAATGGACATTTATGGCTTGATGTCGTGTCAAAATCTGATTTGTTGAAGACGTCTCCTGTAGTCTATGCAACAGACGAGCCTCATCCCTCCCAACTCGAGCTTGAAAAGTACCGGAAATCAGGTCCCAATGGAGCTATTAACGTATCTGTCAAAACACAAGGAGGGCTACATGAGCTAAAGCAGAGAGTGCATGAACTGCTTAATTTGCAGATGGCCAAGATAAATGATATAAGCAACAACCAGGAGAAGTGA
>Glyma08g45370.1 sequence type=predicted peptide gene model=Glyma08g45370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAPSSLFLKGHVLPSSIFLLRNSKGTPNVKMHPIWCLCKAIQTNSYEISNGSYHPTVQQTTEKKTMEKLSRKVESIGAFQKLPIVMPSIDIIGSALRKARKVSPTKGIANIAKREKNKGAKQLDALMKEIAVPLRTYVENFPNKMHLHPYERSLIELTLGDGYYEMVLRKVDSLRKRVVSVGKEHASLCAKSSSKREAEERLNEGLKKIEEIFAQERKVVDDLLGIAKTLRAMPVINLETPTLCLVGAPNVGKSSLVHVLSTGKPEICNYPFTTRGILMGHIILNFQKFQVTDTPGLLRRHDGIIWKS* >Glyma08g45370.2 sequence type=predicted peptide gene model=Glyma08g45370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAPSSLFLKGHVLPSSIFLLRNSKGTPNVKMHPIWCLCKAIQTNSYEISNGSYHPTVQQTTEKKTMEKLSRKVESIGAFQKLPIVMPSIDIIGSALRKARKVSPTKGIANIAKREKNKGAKQLDALMKEIAVPLRTYVENFPNKMHLHPYERSLIELTLGDGYYEMVLRKVDSLRKRVVSVGKEHASLCAKSSSKREAEERLNEGLKKIEEIFAQERKVVDDLLGIAKTLRAMPVINLETPTLCLVGAPNVGKSSLVHVLSTGKPEICNYPFTTRGILMGHIILNFQKFQVTDTPGLLRRHDEDRNNLEKLTLAVLSHLPTAVLYVHDLSGECGTSPSDQFSIYKELRERFNGHLWLDVVSKSDLLKTSPVVYATDEPHPSQLELEKYRKSGPNGAINVSVKTQGGLHELKQRVHELLNLQMAKINDISNNQEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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