Glyma08g45333 - SoyBase

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Report for Sequence Feature Glyma08g45333

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44755084
stop:	44759632
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45333

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05490	AT	Annotation by Michelle Graham. TAIR10: chromatin remodeling 31 \| chr1:1618795-1623195 REVERSE LENGTH=1410	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0390	KOG	DNA repair protein, SNF2 family	JGI		ISS
PTHR10799	Panther	ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED	JGI		ISS
PTHR10799:SF41	Panther	gb def: hypothetical protein c16a3.1c [caenorhabditis elegans]	JGI		ISS
PF00176	PFAM	SNF2 family N-terminal domain	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_Q9ZVY9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T25N20.14 n=2 Tax=Arabidopsis thaliana RepID=Q9ZVY9_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI00023390DC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023390DC related cluster n=1 Tax=unknown RepID=UPI00023390DC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45333

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g45333 not represented in the dataset	Glyma08g45333 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45333 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g339800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45333

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45333

Limit To All Plant Sequences

>Glyma08g45333.1   sequence type=CDS   gene model=Glyma08g45333   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGTTGCTGACAGGACGCGTAGCAAGCGGGGAGGGGTGGTTGGAAGTGGTTTAATAATGGGTGAGAAGAAGAAAAGGGTGCATGACTACCATGAAGAGATTGTCTTGGAAGATAATGAAGAAGGTGCAAGTGTGAAAGTTGAACCTGGGCCTGGTGCTTCTTCATCGTCATCATCATCTGGTGCTCGTGCTTTGAAGCGGGAAAGGGTATCTGAACATGGTTTTCAGAATTTGGGAGGGCGTGCAGATGACCCTATTAAAATCAGTGACAGTGAAGATGATGATGGTGAAGAGGGGTTGAGTGATTTTGAGAAGAAGAGGTTTCTGGGTGAAGAGGAAAAGGAAAGGAAGAGCGAGGAGGGTAAAGGTTGTGGCGGTGAGAAGAAGCATGCTGTGGCTGAGAGTGGTTCAAATGATGAGGGATATGATTCTCTTTTGTCTAGTTTATCGGAGAGTGAGAATGCTGTGACCAGTGATGAAGATTTTCAGGTTGATGATGATGGGAATGAGAGTCATTACTACTCGAGCAGTGATTCTTCTTCATATGATGATGGTGAGAGGGGTGGATGCAGAAAGATGGTGAAAGAGAGGGTGAGAAAGGTGGAGAGTGAAACTGAAAGTAGTGTAGTTTACAAAAGAAAAGGTGAAAGGAAAGATATTGAGCTTGTAGAGGAGGAAGAGCCACGGATTGGTGCTGATTGTTCTAGTGCAACCTCTAATAAATCTGAGATTTATAAGGAGGAACCAGGGCATGGAGCACAGAAGCATAAAGTAAAGAGGGTGGAGAGTGTCAATGCCGATGCCTTTGGTGATCACTCGGAGAGTTCAGATCACTCTATGCAGTCTGAAGCTGAAGCATTGGAACATATGAAAAAAAGAGATAGAGACCATCAAAATGTGTCATTGGAGAATAAGGCAGGAGATTCAGCTGTGGTCAAGATGAGTGAGAAAAATGATAATGTTGATGCCGGCAAGGTAGGAGAACATAAATATGAGTTTAACAGCAATAAACGTGAGAAGCCAGAGAAGGTAAGGGTGGTGGATGACGAAACTGACGACAAACATGAGCTGTATGAAGTCCTAAGGATGCCATCTAGAACAAAAAACCGATGCCTCAAGTTTTTTACTGAATGCTTTTGGGGCGAGAATGATTCTGTTAAAGATGATTCAAATCAGTTGGAAGAAAAGGATGATGATATTGATCAGGGTCAGACTCAGCCACTAGCTTCTAGGGAGACAGTCCTTGTGAATTGGAACTTTACGAAGAAAGAACTCATTGAAAAATCAGAGTTTGAGAAGGAGTTAGATAACTTGTGGGGTGAAATGGATATGCTCCTTCGAGTTGAAGAAATTGGGTCTCAGATTGATAAAGTAGGGGAAAATGAAGAAAATTCAGCCTCACAGTGCAAGCACGACACTATTTTCAATGAGGAGATTGGGATATACTGCAGATGGTGTGGTTGGATTCACACTGAAATCAAATATATCACGCCACCATTTGTGGATAATGAAAGATCTGGTCGAGAGGCGTTATCTGGTGGAGGGAAAACTTCACAATTTGATGGGGTTCTGTTTAATGATTCTGTTGATGACTCGGAGGCAGTTTGGTCTCACAATGAAGGCACGGTTTGGGATCTTATTCCTGACATAAAAGAAAGCTTGTTTCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAGTTTGGCAGGAACCATTGACCTTGCTGAGTTGAAGAGGGTTGACATGCATACTGAGGGAGGGTGCATTATTTCACATGCTCCTGGAACAGGAAAGACAAAGTTGACCATGGTGTTTCTTCAGACATATTTGCAACTGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTGCCAACATATTGCTTACTTGGGAAGATGAGTTAAGGAAGTGGAACCTAGGAATTCCCTTTCATAACTTGAACAATGCTGAATTATCCGGAAACGAGCAAGACATTAATGAAGTTGACTTGTCTGGCAATCAAAGGCAGAATAAGGATGCCATCCGAATGGTGAAGTTGTGTTCGTGGTACAAGGAAAAGAGCATTCTATTAATCAGCTACCATTTGTATGAGAGGCTAGCCAGGGGGTTGTGCGAAGATGATGGGAAAAAAGAGAAGAAAAATAAAAAGATGAAAAAAGGGAAGAAACGTGCAAGGACTAGGGAGTACATTGAAACTGCAATGGGAAAGGTTTTGCGTGACTATCCTGGTTTGCTAATTCTTGATGAAGGGCACACACCACGGAATCAGCGTAGCTATATTTGGAAGGTTCTCTCAGAAAGTAGATCTCAAAAGCGAGTCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTGGAACTCTACAATATTTTGTGCTTAATGAAGCCATCCTTTCCTGACAGCATACCGCAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAAGGAAGGAAAGGAAAGCTTCAAAATATGCGAGTTATGAACCCATTTATTCTGGAAATTCAGCTGATGAGAAAATAAAGCAGCTGAAATCGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCCGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCAGACAGGCTGCAGCAAGAAACTTTGGACATCATTGATTCTTCTCAAAACATACTGAACTTTGAACATAAGTTGGCGTTGGTATCAGTCCATCCATCTCTTTTTCTAAACTGCTCTCTGTCAAAAAAAGAAGAATCTGTTCTTGACAAGGATCAGTTGGAAAAGCTTAGATTGAACCCTTATGTAGGGGTTAAAACCAATTTTTTGTTGGAGCTTGTGAGACTATGTGATGCAGTTAACGAAAAAGTCCTTGTTTTCAGCCAATTTATTGATACCTTATGCTTAATCAAGGACCAACTCGAGTCAGCCTTTCATTGGTCTGTGGGGACTGAAGTGTTGTATATGTATGGCAAGCTAGACCAAAAGCAAAAACAGTCCCTCATTCATAGTTTCAATGATACAAATAGCAAAGCAAAGGTGTTGCTTGCATCTATAAAAGCATCTTCTGAAGGAATTAACTTAATTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCGGTGGAAAGACAAGCTATTTGTCGAGCATATAGACTCGGACAAAAAAAAGTTGTTTACACTTATCATCTTCTTGCACAGGACACCCCTGAATGCATCAAATTTTGTAAACAAGCAGAAAAGGACCGGTTATCTGAACTGGTTTTCTCCAATAAAAATGCTAAAAGTGATAAGCTTAACAGTTGTGGAGCAGCGCTTGAGGATGCAGTTCTTGATATCATGGTTCAGCACGAAAAACTTAAGGATATGTTTGGTGAACTTCTGGTTCAACCAAAGGAGAGAGATTTTGGAGACTTTGGGCCCCTGATGCTTTGA

Predicted protein sequences of Glyma08g45333

Limit To All Plant Sequences

>Glyma08g45333.1   sequence type=predicted peptide   gene model=Glyma08g45333   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVADRTRSKRGGVVGSGLIMGEKKKRVHDYHEEIVLEDNEEGASVKVEPGPGASSSSSSSGARALKRERVSEHGFQNLGGRADDPIKISDSEDDDGEEGLSDFEKKRFLGEEEKERKSEEGKGCGGEKKHAVAESGSNDEGYDSLLSSLSESENAVTSDEDFQVDDDGNESHYYSSSDSSSYDDGERGGCRKMVKERVRKVESETESSVVYKRKGERKDIELVEEEEPRIGADCSSATSNKSEIYKEEPGHGAQKHKVKRVESVNADAFGDHSESSDHSMQSEAEALEHMKKRDRDHQNVSLENKAGDSAVVKMSEKNDNVDAGKVGEHKYEFNSNKREKPEKVRVVDDETDDKHELYEVLRMPSRTKNRCLKFFTECFWGENDSVKDDSNQLEEKDDDIDQGQTQPLASRETVLVNWNFTKKELIEKSEFEKELDNLWGEMDMLLRVEEIGSQIDKVGENEENSASQCKHDTIFNEEIGIYCRWCGWIHTEIKYITPPFVDNERSGREALSGGGKTSQFDGVLFNDSVDDSEAVWSHNEGTVWDLIPDIKESLFPHQQEGFEFIWTSLAGTIDLAELKRVDMHTEGGCIISHAPGTGKTKLTMVFLQTYLQLFPKCLPIIIAPANILLTWEDELRKWNLGIPFHNLNNAELSGNEQDINEVDLSGNQRQNKDAIRMVKLCSWYKEKSILLISYHLYERLARGLCEDDGKKEKKNKKMKKGKKRARTREYIETAMGKVLRDYPGLLILDEGHTPRNQRSYIWKVLSESRSQKRVLLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLRKERKASKYASYEPIYSGNSADEKIKQLKSLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDRLQQETLDIIDSSQNILNFEHKLALVSVHPSLFLNCSLSKKEESVLDKDQLEKLRLNPYVGVKTNFLLELVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFHWSVGTEVLYMYGKLDQKQKQSLIHSFNDTNSKAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLAQDTPECIKFCKQAEKDRLSELVFSNKNAKSDKLNSCGAALEDAVLDIMVQHEKLKDMFGELLVQPKERDFGDFGPLML*

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