Glyma08g45270 - SoyBase

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Report for Sequence Feature Glyma08g45270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44701137
stop:	44708555
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26510	AT	Annotation by Michelle Graham. TAIR10: uridine kinase-like 4 \| chr4:13384503-13387920 FORWARD LENGTH=469	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0004845	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uracil phosphoribosyltransferase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG4203	KOG	Armadillo/beta-Catenin/plakoglobin	JGI		ISS
PTHR10285	Panther	URIDINE KINASE RELATED	JGI		ISS
PF00485	PFAM	Phosphoribulokinase / Uridine kinase family	JGI		ISS
UniRef100_I1KYV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uridine kinase n=1 Tax=Glycine max RepID=I1KYV2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KYV2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uridine kinase n=1 Tax=Glycine max RepID=I1KYV2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g45270 not represented in the dataset	Glyma08g45270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g333400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g45270

Limit To All Plant Sequences

>Glyma08g45270.2   sequence type=transcript   gene model=Glyma08g45270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAAACCAAAAACAAAGGGATTTCACAAAAACATTTGGTGCGTACTCAGCTGTGTCTGTTTGCAATAAATAACTCTCACCTTTCTACCATTGCTCTGCACCTCTTTCTCCTTTTGTCAAATTCTTCTGTTCAACAGGTCTTTGCCAATGGATGCTAAGTCGGCTGTAGAATTAATGGAGTCTTCCTCAGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCAACAACCTCAGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACAATAACTTGACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGATGTTTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGACCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGAATTAGGCGTGACACTACTGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGGTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATAAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTGACATCGGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGCGAGTTTGGAGATCGGTACTTTGGAACAGATGATGATGATGAGCAAGTGGTAGTTTCTTCCCAGTAGTTATTGTAGGGCAGAAGCAGAATCCACAATAATTTCAGTTGTTCATCGTTACCAGTGAGACTTCCTCTCGAAAATAGGTTTAAATTTGTTTTATCACTTCGTGTTGGGGTCTGAATTTTAGTTCTAAATCAATTTTGATTCTATTGGACCTTGAAATACCATTACGTTATCCTTTTGTTTATGAAAATTTTATATTACCTTTTACTATAGTACATATTTTTTCTTTAAACTTGTGTTGATTTCTTTTCTGATATACTTGTCTATGAACATAGTGCAAACCTACTATGCATGTTGCATCTTTGGATGTACAAATCTGGTTTGG

Coding sequences of Glyma08g45270

Limit To All Plant Sequences

>Glyma08g45270.1   sequence type=CDS   gene model=Glyma08g45270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCTAAGTCGGCTGTAGAATTAATGGAGTCTTCCTCAGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCAACAACCTCAGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACAATAACTTGACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGATGTTTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGACCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGAATTAGGCGTGACACTACTGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGGTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATAAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTGACATCGGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGCGAGTTTGGAGATCGGTACTTTGGAACAGATGATGATGATGAGCAAGTGGTAGTTTCTTCCCAGTAG

>Glyma08g45270.2   sequence type=CDS   gene model=Glyma08g45270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCTAAGTCGGCTGTAGAATTAATGGAGTCTTCCTCAGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCAACAACCTCAGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACAATAACTTGACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGATGTTTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGACCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGAATTAGGCGTGACACTACTGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGGTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATAAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTGACATCGGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGCGAGTTTGGAGATCGGTACTTTGGAACAGATGATGATGATGAGCAAGTGGTAGTTTCTTCCCAGTAG

Predicted protein sequences of Glyma08g45270

Limit To All Plant Sequences

>Glyma08g45270.1   sequence type=predicted peptide   gene model=Glyma08g45270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAKSAVELMESSSEVHFSGFHMDGFEQRKASIEQPTTSETDMYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEELTRVQDYNFDHPDAFDTKQLLHVMDKLKHGEAVDIPKYDFKSYKSDDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTTEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQVVVSSQ*

>Glyma08g45270.2   sequence type=predicted peptide   gene model=Glyma08g45270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAKSAVELMESSSEVHFSGFHMDGFEQRKASIEQPTTSETDMYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEELTRVQDYNFDHPDAFDTKQLLHVMDKLKHGEAVDIPKYDFKSYKSDDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTTEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQVVVSSQ*

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