Glyma08g45230 - SoyBase

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Report for Sequence Feature Glyma08g45230

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44651855
stop:	44657338
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29680	AT	Annotation by Michelle Graham. TAIR10: cell division control 6 \| chr2:12689586-12692854 FORWARD LENGTH=508	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG2227	KOG	Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase	JGI		ISS
PTHR10763	Panther	ORIGIN OF REPLICATION BINDING PROTEIN	JGI		ISS
PTHR10763:SF7	Panther	CDC6	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF09079	PFAM	CDC6, C terminal	JGI		ISS
UniRef100_B9SI02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cdc6, putative n=1 Tax=Ricinus communis RepID=B9SI02_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KYU8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYU8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g45230

Paralog	Evidence	Comments
Glyma18g07444	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g45230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g333800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45230

Limit To All Plant Sequences

>Glyma08g45230.1   sequence type=CDS   gene model=Glyma08g45230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGTCATCGCCGCTAAGCGCACATTGAGATCCCACCCCTCATCGCCCCCTCGCAAATCGCCCCGCCGATGCACCGCCGCAACCCCCAATTCCACTCCAACGATGAACAGATTCGGCGCCGACGAAAACCGAGCTGACCCGGAAGCTGTGAAACCCAAGTGGAATCCCAAAGACGGTGAGCAATTGAAGAGGGTGAAGCTGGCATTGCACTTGTCCACTGCGCCGTCTTCGGTCGTGTGCCGCGAGGAGGAGCAGAATGTGGTTTTGGAGTTCTGCAAGGGGTGCGTTGAGCACCAGAAGGCCGGGAGTCTCTACATATGCGGCTGTCCCGGAACTGGGAAATCGTTATCTATGGAGAAAGTGAAAGACAAATTACTCAATTGGGCCAAGGAGGCAGGTCTTCCACAGCCAGATGTTTTGTCTGTAAATTGTACAACCTTTACCAACACATCAGATATTTTCACTAAGATACTTGGGTTAAACCAAACACAGGGTAAAAAGGTTTCGGCTACGCCCTTACAGCAACTTCAGAACATGTATTCTCAGAAATCGTCTAACAAGAACATGACATTGATAGTAGCTGATGAGTTAGATTATTTGATAACCAAAGACAGAGGCGTGCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTTTCTAGATGTATATTAATAGGTGTAGCGAATGCAATTGACCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTAAATTGCAAACCTATTGTTGTAAATTTTCGGGCTTACTCTAAAGATCAGATCCTCAAGATTCTTGAAGAAAGGTTAAATGAACTTCCTTACACTGTCTTCCAACAGCAAGCCATGGAATTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGTGACATGCGGAATGCTCTTTGTATATGCGGGAGGGCAATAGAGATGCTTGAAGCAGAAATTAGAGAGTCTGCCTGCAATTTGAATACTTCATTGGAAGAGATATCATCCTCCAGACAAAATCTTGCTACAGCTCCTGATTTTATGAAAAAACGAGAATTTGAGACTGTAAGGACTGATCATATGGCACGTGCCTTGTCCAAGACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCACATCATCAGCAGATTGTACTCTGCTCTTCTATGAAACATTTTCGTGGAGCCAAGAAAGATACAATCCTTGGAGAGTTGTATAAATCGTATGTGGGGGTATGCAAATCTTGTATAATTCCTCCAGCGGGAATCTTGGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTTGGACAATCTCGAGAGGATAAATTGAGAAGAGTGTCGCCTAAAGTAGATGAGGGTGATATTACTTTTGCATTGCAGGGAGTACGTTTTTTTCATAACTGTCTTTAA

Predicted protein sequences of Glyma08g45230

Limit To All Plant Sequences

>Glyma08g45230.1   sequence type=predicted peptide   gene model=Glyma08g45230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVIAAKRTLRSHPSSPPRKSPRRCTAATPNSTPTMNRFGADENRADPEAVKPKWNPKDGEQLKRVKLALHLSTAPSSVVCREEEQNVVLEFCKGCVEHQKAGSLYICGCPGTGKSLSMEKVKDKLLNWAKEAGLPQPDVLSVNCTTFTNTSDIFTKILGLNQTQGKKVSATPLQQLQNMYSQKSSNKNMTLIVADELDYLITKDRGVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVNFRAYSKDQILKILEERLNELPYTVFQQQAMELCARKVAAASGDMRNALCICGRAIEMLEAEIRESACNLNTSLEEISSSRQNLATAPDFMKKREFETVRTDHMARALSKTYRSPVVDTIQSLPHHQQIVLCSSMKHFRGAKKDTILGELYKSYVGVCKSCIIPPAGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKVDEGDITFALQGVRFFHNCL*

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