Report for Sequence Feature Glyma08g45223
Feature Type: gene_model
Chromosome: Gm08
Start: 44634333
stop: 44641732
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g45223
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G29890 AT
Annotation by Michelle Graham. TAIR10: villin-like 1 | chr2:12744597-12749474 FORWARD LENGTH=911
SoyBase E_val: 0 ISS
GO:0000226 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization
SoyBase N/A ISS
GO:0000911 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation
SoyBase N/A ISS
GO:0006306 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA methylation
SoyBase N/A ISS
GO:0006342 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing
SoyBase N/A ISS
GO:0006346 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing
SoyBase N/A ISS
GO:0007010 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization
SoyBase N/A ISS
GO:0007015 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin filament organization
SoyBase N/A ISS
GO:0009965 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis
SoyBase N/A ISS
GO:0016246 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA interference
SoyBase N/A ISS
GO:0016569 GO-bp
Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification
SoyBase N/A ISS
GO:0016572 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone phosphorylation
SoyBase N/A ISS
GO:0022402 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell cycle process
SoyBase N/A ISS
GO:0030835 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of actin filament depolymerization
SoyBase N/A ISS
GO:0031047 GO-bp
Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA
SoyBase N/A ISS
GO:0031048 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA
SoyBase N/A ISS
GO:0042127 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation
SoyBase N/A ISS
GO:0045010 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin nucleation
SoyBase N/A ISS
GO:0048523 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process
SoyBase N/A ISS
GO:0051225 GO-bp
Annotation by Michelle Graham. GO Biological Process: spindle assembly
SoyBase N/A ISS
GO:0051258 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein polymerization
SoyBase N/A ISS
GO:0051322 GO-bp
Annotation by Michelle Graham. GO Biological Process: anaphase
SoyBase N/A ISS
GO:0051567 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0015629 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton
SoyBase N/A ISS
GO:0003779 GO-mf
Annotation by Michelle Graham. GO Molecular Function: actin binding
SoyBase N/A ISS
GO:0051015 GO-mf
Annotation by Michelle Graham. GO Molecular Function: actin filament binding
SoyBase N/A ISS
KOG0443
KOG
Actin regulatory proteins (gelsolin/villin family)
JGI ISS
PTHR11977 Panther
VILLIN
JGI ISS
PTHR11977:SF9 Panther
FLIGHTLESS-1-RELATED
JGI ISS
PF00626 PFAM
Gelsolin repeat
JGI ISS
UniRef100_B9SI12 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Villin 1-4, putative n=1 Tax=Ricinus communis RepID=B9SI12_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233910B UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233910B related cluster n=1 Tax=unknown RepID=UPI000233910B
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g45223
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g45223
Paralog Evidence Comments
Glyma18g07460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g45223 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma08g45223
Coding sequences of Glyma08g45223
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g45223.1 sequence type=CDS gene model=Glyma08g45223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTATTGTCACTAAAGATATGGATTCTGCATTCCAAACTGCTGGAGCAAACCCAGGCTTAGAAGTTTGGTGTATTGAGAACCAGCGGCTGGTTTCAGTGTCAAATTCAAGCCATGGAAAATTCTATACTGGAAGTGCATACTTAGTCTTGAATGCAGTCTTTCCAAAAATTGGCCCTCCTCAGTATGACATACATTATTGGTTGGGAAATGAAGCAAAGAAGGTAGACTCAAGCTTGGCATCAGACAAGGCACTTGATCTGGATGCAGCCTTAGGATCGTGTAGTGTTCAATACAGGGAAATTCAAGGCCAAGAATCGCAGAAGTTTCTGTCATACTTCAGACCTTGTCTAATACCCATTGAAGGGGTGTTTACTTCAAAGCAGGGGAACTTGAATGGTGAATACCAAGTTAGCATGTATACTTGCAAGGGAGACTATGTTGTTCACGTGAAAGAAGTGCCATTTCTAAGGTCATCATTGAATCATGAAGATGTATTCATTCTTGACACTGCCTTAAAAATCTTCCTCTTCAGTGGGTGCAACTCTACCATTCAAGAAAGAGCCAAAGCTTTGGAGGTTGTTCAGTATATCAAGGAGAATAAGCATGGAGGAAAATGCGAAGTGGCAACAATAGAGGATGGAAAATTTGTTGGTGATTCTGATGTGGGTGAATTTTGGAGTTTATTTGGTGGTTACGCTCCCATTCCTCGAGATTCGCCTTGTGTTCAGGAATCTGAGACTCCTCCTGTAAAGCTATTTTGGATAAATTTACAGGGAAAACTTTGTGAGACTGGAAGCAATGCATTCAGCAAAGAAATGCTTGAGACAGAAAAGTGTTATATGTTGGACTGTGATGGTGAGATTTTTGTCTGGATGGGAAGGCAGACTTTTTTGACAGAAAGAAGAACAGCAATCAGAGCTGTAGAAGAATTTGTCAGAAATGAAGGCAGATCAAACAAGACTCATTTGACATTTTTATCAGAAGGATTGGAAAGTACCATCTTTCGGTCATACTTTACTAATTGGCCTAAAACTGTGGAGCCTAGGCTTTATGAGGAAGGCAAAGAAAAAGTGGCAGCCATATTCAAGCACCAGGGTTATGAGGTGAAAGAGCTTCCTGAAGAAGACAATGAGCCATCTATAGATTGCACTGGCACAATAAAAGTTTGGCGGGTGGATGGTGATGAATTGTCCCTTCTTTCAGTTACAGAACTGACAAAGCTTTACAGTGGAGATTGCTATATAGTACAGTATACATTTCCAGGAAATGGAAGGGATGAGACACTATTTTATGCTTGGCTTGGCTCCAAGTGTGTAACGGAGGATAAAGCAGCTGCCATTTCCCACATGAGTACTATGGCTGATTCAATCAGAACTAGTCCGGCTATGGCTCAAATCCATGAGGGTAAGGAACCAGCTCAATTTTTCTCAATACTTCAGAGAGTAATCATATTCAAGGGGGGAACCAGTTCAGGATATAGGAAGTTTATAGAAGAAAAAGGTATAGTGGATGAAACTTACAATAAAAACCTGGTTACTTTGTTTCGGGTACAAGGTACAAGTCCAGATAATATGCAGGCCATCCAAGTTGATCAAGTTTCAACCTCCTTGAATTCATCGTATTGCTACATTCTGCAAAATAAAGCATCTATCTATACTTGGATTGGGAGCCTATCTTCAGCTAGAGACCATAATCTTCTTGATAGAATGGTGGAGCTACTTAATCCAACATGGCTGCCTGTTTCTGTGAGGGAAGGGAATGAGCCTGATATTTTCTGGGATGCTCTCGGTGGAAAGGCAGAGTATCCAAAGGGCAAAGAAATTCAAGGATTCATAGATGATCCACATTTGTTTGCATTAAAAATAGCGAGAGGGAAACCATGTCTAATTGATGATTCTGTTTCTCACGCTCATTTGTTGGAGTTTTAA
Predicted protein sequences of Glyma08g45223
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g45223.1 sequence type=predicted peptide gene model=Glyma08g45223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPIVTKDMDSAFQTAGANPGLEVWCIENQRLVSVSNSSHGKFYTGSAYLVLNAVFPKIGPPQYDIHYWLGNEAKKVDSSLASDKALDLDAALGSCSVQYREIQGQESQKFLSYFRPCLIPIEGVFTSKQGNLNGEYQVSMYTCKGDYVVHVKEVPFLRSSLNHEDVFILDTALKIFLFSGCNSTIQERAKALEVVQYIKENKHGGKCEVATIEDGKFVGDSDVGEFWSLFGGYAPIPRDSPCVQESETPPVKLFWINLQGKLCETGSNAFSKEMLETEKCYMLDCDGEIFVWMGRQTFLTERRTAIRAVEEFVRNEGRSNKTHLTFLSEGLESTIFRSYFTNWPKTVEPRLYEEGKEKVAAIFKHQGYEVKELPEEDNEPSIDCTGTIKVWRVDGDELSLLSVTELTKLYSGDCYIVQYTFPGNGRDETLFYAWLGSKCVTEDKAAAISHMSTMADSIRTSPAMAQIHEGKEPAQFFSILQRVIIFKGGTSSGYRKFIEEKGIVDETYNKNLVTLFRVQGTSPDNMQAIQVDQVSTSLNSSYCYILQNKASIYTWIGSLSSARDHNLLDRMVELLNPTWLPVSVREGNEPDIFWDALGGKAEYPKGKEIQGFIDDPHLFALKIARGKPCLIDDSVSHAHLLEF*