Glyma08g45210 - SoyBase

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Report for Sequence Feature Glyma08g45210

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44622012
stop:	44630245
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46970	AT	Annotation by Michelle Graham. TAIR10: alpha-glucan phosphorylase 2 \| chr3:17301625-17306111 REVERSE LENGTH=841	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004645	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorylase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG2099	KOG	Glycogen phosphorylase	JGI		ISS
PTHR11468	Panther	GLYCOGEN PHOSPHORYLASE	JGI		ISS
PF00343	PFAM	Carbohydrate phosphorylase	JGI		ISS
UniRef100_I1KYU6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphorylase n=1 Tax=Glycine max RepID=I1KYU6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KYU6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphorylase n=1 Tax=Glycine max RepID=I1KYU6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g45210

Paralog	Evidence	Comments
Glyma18g07480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g45210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g334000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45210

Limit To All Plant Sequences

>Glyma08g45210.1   sequence type=CDS   gene model=Glyma08g45210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTAAAGTAGATGCTAATGGTGGTGGTGGTAAGGGTGGGGTTTCTGCAGTTTCTGCCAAGGTTCCAGCAGTGGCACATCCATTGGCTGAAAAGCCTGATGAGGTTGCATCCAATATTAGTTACCATGCTCAGTTCAGTCCTCATTTTTCCCCTTTCAAGTTTGAGCTGGAACAAGCTTACTATGCCACTGCAGAGAGTGTTCGTGACCGTCTGATTCGGCAATGGAATGAAACGTACCTTCATTTTCACAAAGTTGATCCCAAGCAAACTTACTACTTATCGATGGAGTTCCTTCAAGGTCGAGCTTTGACCAATGCCATTGGAAATCTGAATATCCAAGATGCATATGCTAATGCTTTGCGCAAATTTGGACTTGAACTTGAAGAAATAGCAGAGCAGGAGAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTAGGCTTGCTTCTTGCTTTCTGGATTCCATGGCAACACTTAATTTGCCTTCTTGGGGGTATGGTTTGAGGTATAGATACGGGCTATTTAAGCAGAGAATCACCAGGGAAGGTCAGGAGGAAGTAGCAGAGGACTGGCTAGAGAAGTTTAGCCCCTGGGAAGTAGTGAGGCATGACATTTTGTACCCCATCAGATTCTTTGGTCATGTTGAGGTTAATCCTGATGGAAGCCGAAAATGGGTTGGAGGAGAGGTTGTGCAAGCACTGGCTTATGATGTGCCAATTCCAGGTTACCAAACCAAGAACACCATCAGTCTTCGTCTCTGGGAGGCAAAAGCGAGTGCTGAGGATTTCAATTTATTTTTATTTAATGATGGGCAACATGATGCTGCTTCAGTGCTTCACTCACGAGCTCAACAGATTTGTGCAGTTTTATATCCTGGCGATACCACAGAAGGTGGAAAACTTCTACGGTTGAAGCAGCAGTTCTTTCTCTGCAGTGCATCACTCCAAGACATAATATCCAGATTTAAGGAGAGGAGACAAGGGCCCTGGAACTGGTCAGAGTTTCCAACAAAGGTTGCTGTACAGTTGAATGATACACACCCAACACTTGCAATACCAGAGTTGATGCGATTACTAATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAAGACTATTGCGTACACTAATCATACTGTCCTCCCTGAAGCACTGGAGAAATGGTCTCAACCTGTAATGTGGAAACTACTTCCACGCCATATGGAAATCATACAAGAAATAGACAAGAGATTCACTGCAATGATAAATACAACCCGATTGGACCTTGAGAATGAGCTTTCCGCCATGCGCATCTTGGATGATAATCCCCAGAAGCCGGTAGTTCGGATGGCAAATTTGTGTGTGGTTTCTTCTCATGCGGTGAATGGTGTTGCTCAGTTACACAGTGATATATTAAAGTCAGAATTATTTGCAAATTATGTTTCAATATGGCCAACAAAGTTCCAAAATAAAACCAATGGGATAACACCTCGAAGATGGCTCCAATTTTGCAACCCTGAGCTAGGCGGGATAATCACCAAGTGGTTAAAAACTGATAAATGGGTAACCAATCTTGACTTGTTAACAGGTCTTCGACAGTTTGCTGACAATGAAGATCTGCAAGCAGAATGGCTGTCTGCAAAGATGGCTAGTAAGCAGCGCTTGGCACGATATGTTTTGCAGGTGACAGGGGAGAGCATTGACCCAGATACTCTATTTGACATTCAAGTCAAGCGTATCCATGAATACAAGAGGCAGCTATTAAACATCCTTGGTGTGATTTATAGATACAAGAAGCTAAAGGAGATGAGCCTTGAAGAACGTAAAAACACTACTCCACGCACGGTGATGATTGGAGGAAAGGCATTTGCAACATACACAAATGCTATAAGGATAGTCAGGTTGGTGAATGATGTCGGTGCTGTTGTCAACAGTGATCCTGAGGTCAACGGCTACTTGAAGGTTGTGTTTGTCCCAAATTACAATGTGTCTGTGGCAGAGGTGCTGATTCCAGGAAGTGAGCTTTCTCAGCATATTAGCACTGCAGGCATGGAAGCAAGTGGCACAAGCAACATGAAATTTGCTTTAAATGGGTGCCTTATAATAGGTACCTTAGATGGAGCCAATGTGGAAATCAGGGAGGAGATTGGTGAGGATAATTTTTTCCTTTTTGGTGCCACAGCAGAAGATGTCCCTCGACTGAGGAAGGAAAGAGAGAATGGACTGTTCAAACCCGATCCTCGATTTGAAGAGGCAAAGAAGTTTATTAGGAGTGGGGTGTTTGGAAGCTATGACTATAATCCATTGCTTGAGTCCTTGGAAGGAAATTCTGGTTATGGCCGTGGTGATTACTTTCTAGTTGGTCATGACTTTCCAAGCTACATGGATACTCAGGCAAAAGTTGATGAAGCATACCGTGATAGGAAAAGATGGCTAAAAATGTCCATCCTAAGCACTGCAGGGAGTGGAAAATTCAGCAGTGACCGGACAATTGCTCAATATGCCAAGGAAATTTGGAACATAGAAGAGTGCCGCGTGCCATAA

Predicted protein sequences of Glyma08g45210

Limit To All Plant Sequences

>Glyma08g45210.1   sequence type=predicted peptide   gene model=Glyma08g45210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKVDANGGGGKGGVSAVSAKVPAVAHPLAEKPDEVASNISYHAQFSPHFSPFKFELEQAYYATAESVRDRLIRQWNETYLHFHKVDPKQTYYLSMEFLQGRALTNAIGNLNIQDAYANALRKFGLELEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPSWGYGLRYRYGLFKQRITREGQEEVAEDWLEKFSPWEVVRHDILYPIRFFGHVEVNPDGSRKWVGGEVVQALAYDVPIPGYQTKNTISLRLWEAKASAEDFNLFLFNDGQHDAASVLHSRAQQICAVLYPGDTTEGGKLLRLKQQFFLCSASLQDIISRFKERRQGPWNWSEFPTKVAVQLNDTHPTLAIPELMRLLMDDEGLGWDEAWDVTSKTIAYTNHTVLPEALEKWSQPVMWKLLPRHMEIIQEIDKRFTAMINTTRLDLENELSAMRILDDNPQKPVVRMANLCVVSSHAVNGVAQLHSDILKSELFANYVSIWPTKFQNKTNGITPRRWLQFCNPELGGIITKWLKTDKWVTNLDLLTGLRQFADNEDLQAEWLSAKMASKQRLARYVLQVTGESIDPDTLFDIQVKRIHEYKRQLLNILGVIYRYKKLKEMSLEERKNTTPRTVMIGGKAFATYTNAIRIVRLVNDVGAVVNSDPEVNGYLKVVFVPNYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEDNFFLFGATAEDVPRLRKERENGLFKPDPRFEEAKKFIRSGVFGSYDYNPLLESLEGNSGYGRGDYFLVGHDFPSYMDTQAKVDEAYRDRKRWLKMSILSTAGSGKFSSDRTIAQYAKEIWNIEECRVP*

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