Glyma08g45200 - SoyBase

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Report for Sequence Feature Glyma08g45200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44615698
stop:	44620087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07350	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:2257732-2260101 REVERSE LENGTH=382	SoyBase	E_val: 2.00E-54	ISS
GO:0008380	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0043484	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of RNA splicing	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0149	KOG	Predicted RNA-binding protein SEB4 (RRM superfamily)	JGI		ISS
PTHR15241	Panther	TRANSFORMER-2-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9S368	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FUS-interacting serine-arginine-rich protein 1, putative n=1 Tax=Ricinus communis RepID=B9S368_RICCO	SoyBase	E_val: 6.00E-72	ISS
UniRef100_I1KYU5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYU5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g45200

Paralog	Evidence	Comments
Glyma18g07495	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g45200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g334100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45200

Limit To All Plant Sequences

>Glyma08g45200.2   sequence type=CDS   gene model=Glyma08g45200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGGGACATAACCCAAGAACAGCAAGAGGATCCACAACCTCACGCTTCTCCCTCTATAAAGCTCTGCACCCTAACCACTTTCGATTTTTTTCAAAACGCAACTGTCATCGTGTCGTTCACCGATAAGATGTCGTATTCAAGGAGATCAAGGTATTCTCGTTCTCCTTCTCCATACAAGCGATACAGTAGGTCTGTGTCCAGGTCTCTCTCAAGGACAAGCTCCAGAAGCCGTTCAAGGAGTTTATCAAGAGATGCAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAACATTTTTCTGCTGAGGGAAAAGTGATAGATGTCCATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGCTTTGTGACAATGGAGACTCTTGAGGAGGCAGATCGATGTGTAAAGTATCTGAATCGCTCAGTACTTGAAGGGCGTGTCATCACGGTGGAGAAGGCTAAAAGACGACGTGGTCGAACCCCAACACCAGGGAAGTATCTAGGGCTGAGAACTATTCGTGCTCAACGGCGTTCTCCAAGTGACTCTCCTCGTCGCTCCCCTAGCTATTCTCCTTATAGAAGAAGCTATAGCCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATAGGAGGAGGAAGTCAAACTATCCATATCACTCTAGGCGAAGGTCATACTCTCCATACTACAGCCGGTACAGGTCTTATTCTCGATATGATCGACACAGGTCATATTCTCGCTCTTGCTCTCCTTATAGCAGGTCACCTGTCAGCATCCGCGACAGATCATACTCTCCTTATGACTCACGATATGACTCACCGGATGATCACTCCTACAGAAGGCACCATTACAGATCTGTTTCACGAGGTGCCTCGCCTGATGATCGCTATTATAGAAGGCACCATTACAGGTCTGTTTCTCGAAGTGCCTCACCCAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCTCGGAGTGCCACTCCTGTTTCAAAGAGGAGCAACTCGCGAAGTGTGTCCCCCAGGTCAAGGAAGAGTCATTCAAGAAGCTCCAAGAGGAGTGGCAAATATGAGAAACACTACTCAAGAAGCCCGAGTGTGAGTGCAAGTTCAAGATCAGTATCGAGGTCAAATACTCCAAGGTCTACCTCTCCTTCAACTTGA

Predicted protein sequences of Glyma08g45200

Limit To All Plant Sequences

>Glyma08g45200.2   sequence type=predicted peptide   gene model=Glyma08g45200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFWDITQEQQEDPQPHASPSIKLCTLTTFDFFQNATVIVSFTDKMSYSRRSRYSRSPSPYKRYSRSVSRSLSRTSSRSRSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFSAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADRCVKYLNRSVLEGRVITVEKAKRRRGRTPTPGKYLGLRTIRAQRRSPSDSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYRRRKSNYPYHSRRRSYSPYYSRYRSYSRYDRHRSYSRSCSPYSRSPVSIRDRSYSPYDSRYDSPDDHSYRRHHYRSVSRGASPDDRYYRRHHYRSVSRSASPRPRRRSRRSYSRSATPVSKRSNSRSVSPRSRKSHSRSSKRSGKYEKHYSRSPSVSASSRSVSRSNTPRSTSPST*

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