Glyma08g45176 - SoyBase

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Report for Sequence Feature Glyma08g45176

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44612964
stop:	44613545
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45176

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13850	AT	Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 22 \| chr3:4559910-4560716 FORWARD LENGTH=268	SoyBase	E_val: 1.00E-43	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_A2Q435	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=A2Q435_MEDTR	SoyBase	E_val: 3.00E-46	ISS
UniRef100_I1M5B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5B9_SOYBN	SoyBase	E_val: 1.00E-99	ISS

Expression Patterns of Glyma08g45176

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g45176 not represented in the dataset	Glyma08g45176 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g45176 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g334200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45176

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45176

Limit To All Plant Sequences

>Glyma08g45176.1   sequence type=CDS   gene model=Glyma08g45176   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGGAGCAGCACACAGGCATGTGCAGCTTGTAAGTACCAACGCAGGAAGTGCGGGTCCAACTGCATTCTGGCGCCTTATTTTCCTCATGATCGCCAAAAACAGTTCCTTAATGCCCATCGTTTATTCGGGGTTGGCAAGATCACCAACATGATTAAGCCCCTCGATCAGCACCACAGAGACTTAGCCATGAGCACCCTTATCTACGAATCCGACATGCGCGCCCGTGACCCCATTGGTGGTTGCTACAGCCTCGTCCTCCAATTGCAATCTCAGATCTTTTACGCCACCCAACAACTTCATCTTCTTCTTCAACACCTTGCTTATTTCAAATCACACCAACCTTCTTCTAATTCCTCTGACATAGTCAATAATGTCACTCCTCAGCCGCCTGACCCCCTTGAACAAACTCCACAGGAACAGCAGCAACAACAACAATGTTTTAACTACAATCTTTTGCAAGAAGATGATATCAATATGTGGGCCATTCAGAATTCTTTATCTCTTTTGTCACCCTTGTCCTTAGAGAATAACATCAATCAAGATCCTGTTGTTGATCATGGATCGCACTCTCTCTAA

Predicted protein sequences of Glyma08g45176

Limit To All Plant Sequences

>Glyma08g45176.1   sequence type=predicted peptide   gene model=Glyma08g45176   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRSSTQACAACKYQRRKCGSNCILAPYFPHDRQKQFLNAHRLFGVGKITNMIKPLDQHHRDLAMSTLIYESDMRARDPIGGCYSLVLQLQSQIFYATQQLHLLLQHLAYFKSHQPSSNSSDIVNNVTPQPPDPLEQTPQEQQQQQQCFNYNLLQEDDINMWAIQNSLSLLSPLSLENNINQDPVVDHGSHSL*

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