SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58970 | AT | Annotation by Michelle Graham. TAIR10: uncoupling protein 2 | chr5:23808642-23811018 REVERSE LENGTH=305 | SoyBase | E_val: 4.00E-164 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006839 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial transport | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031966 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane | SoyBase | N/A | ISS |
| GO:0017077 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidative phosphorylation uncoupler activity | SoyBase | N/A | ISS |
| KOG0753 | KOG | Mitochondrial fatty acid anion carrier protein/Uncoupling protein | JGI | ISS | |
| PTHR24089 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24089:SF28 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00153 | PFAM | Mitochondrial carrier protein | JGI | ISS | |
| UniRef100_B9S373 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial uncoupling protein, putative n=1 Tax=Ricinus communis RepID=B9S373_RICCO | SoyBase | E_val: 3.00E-170 | ISS |
| UniRef100_I1KYU0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYU0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g45130 not represented in the dataset |
Glyma08g45130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g07540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g334800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g45130.2 sequence type=transcript gene model=Glyma08g45130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTCTCTCTGTGTCTAACCACTCTATCTTGGAGTGTGAAAGTAACGCAACTAACACCACACCTATATATTAATTTACCGTGAACTCGTTTGAAAGATTTAACCCAAAGTGGTTGCTTGCGAAGTTGCGTTAATGCTACTACTCTCCTTCAGCTTCTTAATCACTCTCACCCAACCCTTTCTTCTTCTTCTTCTTACCAGCGTCAACAATGTCAGATCCGTACCAGATTTCGTTCGCTCAAGCCTTCTTGTGCAGCGCTTTCGCCGCGTGTTTCGCCGAGTTTTGTACTATTCCTCTGGACACAGCTAAGGTCAGGCTTCAACTCCAAAAGAAGGTAGGGATTGATGATGGAGTGGGTTTACCTAAATACAAGGGTTTGCTGGGCACAGTTAAGACCATTGCTAGAGAAGAGGGTATATCAGCTCTGTGGAAAGGCATTGTTCCTGGTTTACACCGCCAATGTTTATATGGAGGCTTAAGAATTGGGTTATATGATCCTGTGAAAACATTTCTTGTTGGTAGTGCATTTGTTGGAGAGGTTCCATTATACCATATGATATTGGCTGCTCTGCTGACTGGTGCTTTGGCAATCACAATTGCTAATCCAACTGATCTAGTCAAAGTTAGGCTTCAAGCTGAAGGTCAATTGCCAACTGGGGTACCTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAAGAAGGGATAGGGGCCTTGTGGACAGGTCTTGGGGCCAATATAGCAAGGAATGCAATTATAAATGCTGCGGAATTGGCTAGCTATGATAAAGTGAAACGGACGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTCGCTGGCTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGGTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGAATGCTTTCTCAAGACTTTGCTTAATGAGAACTTTATTATATGAGGTGACTTGGGAGGCCGGACACAAACTTTGTATTGCATGATTAAAGAGGCTATTGAGCAGCGGCGCACTTAATCCCCCAAACAATGCATATGGCTTTTCCATGCTAAAAGCAAGCTTTGTTGTTCTGATCCTTGAACTAACTGAAAATATTTTTAACAGTTGCCACGAGGTTGTTGGTTCGATAAATAAGTTGACATGGAGGTCTGCATAAAGTTTGTCTTTTTCTCTGTACAGCTTGAACTCATGTCATAAATGTATTGCAGGGATTTTTGGCCTTCTATAAAGGTTTCCTTCCTAATTTTAGTCGAGTAGGAGCCTGGAATGTGATTATGTTTCTTACCCTTGAACAAGCAAAGAGAGTTATAAGAGGATAATTGTTGTTAGTTGTTACTCTTCATGATTGAGATTCACCAAGCAAATTTAGTGTTCTTTTTCGGGTGAGTGCTACTGCTATCAGATGAACAACAGATTTGTTAGCAGAAAGGTGGTTTTTCTACATTTACTTCTGCCGTGTGGATGGACGTCACGCTTCATATATTCTTAGTCGATGAATAAACCGTCAAATTACCATTGTCTCCTACTTGGGCCATGTGGACGCCACAATTAAAACATTCTTGGCTACAATGAATAGACCGTGAAATTACATTTACTTGAAAGGCATTCACTGTACTGGATCGATATGTAATGTATTTTTGGGAAATAAGTTGCGTATTTCCCAACTCATTGAATAGACAAATGAAATGAAACATGTATGAATACTTTAGAGTATAGCTTATTACTTCATTCAAATATCATGGGGTCTATTGCCATTTTTGAATGGATATTGGATTTTGT
>Glyma08g45130.1 sequence type=CDS gene model=Glyma08g45130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGATCCGTACCAGATTTCGTTCGCTCAAGCCTTCTTGTGCAGCGCTTTCGCCGCGTGTTTCGCCGAGTTTTGTACTATTCCTCTGGACACAGCTAAGGTCAGGCTTCAACTCCAAAAGAAGGTAGGGATTGATGATGGAGTGGGTTTACCTAAATACAAGGGTTTGCTGGGCACAGTTAAGACCATTGCTAGAGAAGAGGGTATATCAGCTCTGTGGAAAGGCATTGTTCCTGGTTTACACCGCCAATGTTTATATGGAGGCTTAAGAATTGGGTTATATGATCCTGTGAAAACATTTCTTGTTGGTAGTGCATTTGTTGGAGAGGTTCCATTATACCATATGATATTGGCTGCTCTGCTGACTGGTGCTTTGGCAATCACAATTGCTAATCCAACTGATCTAGTCAAAGTTAGGCTTCAAGCTGAAGGTCAATTGCCAACTGGGGTACCTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAAGAAGGGATAGGGGCCTTGTGGACAGGTCTTGGGGCCAATATAGCAAGGAATGCAATTATAAATGCTGCGGAATTGGCTAGCTATGATAAAGTGAAACGGACGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTCGCTGGCTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGGTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGAATGCTTTCTCAAGACTTTGCTTAATGAGGGATTTTTGGCCTTCTATAAAGGTTTCCTTCCTAATTTTAGTCGAGTAGGAGCCTGGAATGTGATTATGTTTCTTACCCTTGAACAAGCAAAGAGAGTTATAAGAGGATAA >Glyma08g45130.2 sequence type=CDS gene model=Glyma08g45130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGATCCGTACCAGATTTCGTTCGCTCAAGCCTTCTTGTGCAGCGCTTTCGCCGCGTGTTTCGCCGAGTTTTGTACTATTCCTCTGGACACAGCTAAGGTCAGGCTTCAACTCCAAAAGAAGGTAGGGATTGATGATGGAGTGGGTTTACCTAAATACAAGGGTTTGCTGGGCACAGTTAAGACCATTGCTAGAGAAGAGGGTATATCAGCTCTGTGGAAAGGCATTGTTCCTGGTTTACACCGCCAATGTTTATATGGAGGCTTAAGAATTGGGTTATATGATCCTGTGAAAACATTTCTTGTTGGTAGTGCATTTGTTGGAGAGGTTCCATTATACCATATGATATTGGCTGCTCTGCTGACTGGTGCTTTGGCAATCACAATTGCTAATCCAACTGATCTAGTCAAAGTTAGGCTTCAAGCTGAAGGTCAATTGCCAACTGGGGTACCTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAAGAAGGGATAGGGGCCTTGTGGACAGGTCTTGGGGCCAATATAGCAAGGAATGCAATTATAAATGCTGCGGAATTGGCTAGCTATGATAAAGTGAAACGGACGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTCGCTGGCTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGGTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGAATGCTTTCTCAAGACTTTGCTTAATGAGAACTTTATTATATGA
>Glyma08g45130.1 sequence type=predicted peptide gene model=Glyma08g45130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDPYQISFAQAFLCSAFAACFAEFCTIPLDTAKVRLQLQKKVGIDDGVGLPKYKGLLGTVKTIAREEGISALWKGIVPGLHRQCLYGGLRIGLYDPVKTFLVGSAFVGEVPLYHMILAALLTGALAITIANPTDLVKVRLQAEGQLPTGVPKRYSGAIDAYLTILRQEGIGALWTGLGANIARNAIINAAELASYDKVKRTILKIPGFMDNVYTHLLAGLGAGLFAVFIGSPVDVVKSRMMGDSTYKSTFECFLKTLLNEGFLAFYKGFLPNFSRVGAWNVIMFLTLEQAKRVIRG* >Glyma08g45130.2 sequence type=predicted peptide gene model=Glyma08g45130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDPYQISFAQAFLCSAFAACFAEFCTIPLDTAKVRLQLQKKVGIDDGVGLPKYKGLLGTVKTIAREEGISALWKGIVPGLHRQCLYGGLRIGLYDPVKTFLVGSAFVGEVPLYHMILAALLTGALAITIANPTDLVKVRLQAEGQLPTGVPKRYSGAIDAYLTILRQEGIGALWTGLGANIARNAIINAAELASYDKVKRTILKIPGFMDNVYTHLLAGLGAGLFAVFIGSPVDVVKSRMMGDSTYKSTFECFLKTLLNENFII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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