Glyma08g45090 - SoyBase

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Report for Sequence Feature Glyma08g45090

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44539101
stop:	44542355
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g45090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67630	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:26967535-26969306 REVERSE LENGTH=469	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003678	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG2680	KOG	DNA helicase TIP49, TBP-interacting protein	JGI		ISS
PTHR11093	Panther	RUVB-RELATED REPTIN AND PONTIN	JGI		ISS
PF06068	PFAM	TIP49 C-terminus	JGI		ISS
UniRef100_G7J268	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RuvB DNA helicase-like protein n=1 Tax=Medicago truncatula RepID=G7J268_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KYT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYT6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g45090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g45090

Paralog	Evidence	Comments
Glyma18g07830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g45090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g335300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g45090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g45090

Limit To All Plant Sequences

>Glyma08g45090.1   sequence type=CDS   gene model=Glyma08g45090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGCTGAAACTCTCTGAGAGCCGCGATCTGACCCGCATAGAGCGCGTGGGCGCGCACTCCCACATCCGCGGCCTTGGCCTGGACTCCTCCCTGGAGCCGCGCGCCGTCTCGGACGGCATGGTTGGGCAAACCGCCGCCCGCAAGGCCGCCGGCGTGATCCTCCAGATGATAAAAGACGGCAAAATCGCCGGCCGTGCAGTCCTCCTGGCCGGCCAGCCCGGCACCGGCAAGACCGCCATCGCCATGGGCATGGCCAAGTCCCTCGGCCTCGAAACCCCCTTCGCCATGATCGCCGCCAGCGAAATCTTCTCCCTTGAGATGTCGAAAACCGAAGCCCTCACCCAGGCCTTCCGCAAGGCCATCGGCGTCCGCATCAAGGAAGAAACCGAGGTCATCGAGGGCGAAGTCGTCGAGGTTCAAATCGACCGTCCCGCGGTGGCTGGCGCCGCCGCGAAGACCGGGAAGCTGACGCTGAAGTCGACCGAGATGGAGACGGTTTACGACCTCGGCGCGAAGATGATTGAAGCGCTGGGGAAGGAGAAGGTGAGCAGCGGCGATGTTATTGCGATTGATAAGGCGTCCGGGAAGATTACGAAGCTCGGACGATCGTTTTCGCGGTCGAGGGACTTTGACGCTATGGGGCCGCAGGTGAAGTTCGTGCAGTGTCCCGATGGGGAGTTGCAGAAGAGGAAGGAGGTCGTGCATTGCGTTACGCTTCATGAGATTGATGTTATTAATAGCAGAACACAGGGATTTCTGGCTCTTTTCACAGGGGATACGGGTGAAATTCGTGCTGAGGTCAGAGAGCAAATTGACACCAAAGTGGCAGAGTGGAGAGAAGAAGGAAAGGCAGAGATTGTGCCTGGTGTTCTTTTCATTGATGAGGTGCACATGCTTGACATAGAGTGCTTTTCTTTCCTTAATCGGGCTCTGGAGAATGAGATGGCTCCCATATTAGTTGTTGCTACCAACAGAGGCATCACAACTATCAGGGGAACAAATTACAAATCCCCACATGGGATTCCCATTGATCTGCTTGACCGACTTCTCATCATCTCTACCCAACCTTACACAGAGGATGAAATTCGCAAGATTCTGGATATCAGATGCCAAGAGGAAGACGTAGACATGAGTGAAGGTGCAAAGTGTTTGTTAACCAAAATAGGTGTAGAAACATCTTTGAGATATGCTATTCATCTAATCACAGCAGCTGCATTGGCATGCCAAAAGCGAAAGGGGAAGACAGTGGAGTTGGATGATATAAATCGGGTTTACAATCTGTTTTTGGATGTCAAAAGATCAACACAGTACCTAATGGAGTACCAAAGTCAGTACATGTTCAATGAAACAGGAGAAGCTGATGAAGATGAAACCAATGCCATGGTCTCTTAG

Predicted protein sequences of Glyma08g45090

Limit To All Plant Sequences

>Glyma08g45090.1   sequence type=predicted peptide   gene model=Glyma08g45090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAELKLSESRDLTRIERVGAHSHIRGLGLDSSLEPRAVSDGMVGQTAARKAAGVILQMIKDGKIAGRAVLLAGQPGTGKTAIAMGMAKSLGLETPFAMIAASEIFSLEMSKTEALTQAFRKAIGVRIKEETEVIEGEVVEVQIDRPAVAGAAAKTGKLTLKSTEMETVYDLGAKMIEALGKEKVSSGDVIAIDKASGKITKLGRSFSRSRDFDAMGPQVKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPILVVATNRGITTIRGTNYKSPHGIPIDLLDRLLIISTQPYTEDEIRKILDIRCQEEDVDMSEGAKCLLTKIGVETSLRYAIHLITAAALACQKRKGKTVELDDINRVYNLFLDVKRSTQYLMEYQSQYMFNETGEADEDETNAMVS*

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